Pierrick Roger
| Snapshot Date: 2024-10-27 02:55 -0400 (Sun, 27 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: devel |
| git_last_commit: c3d59a4 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-10-28 11:48 -0400 (Mon, 28 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4501 |
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4761 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4504 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4535 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4483 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4491 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 204/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.11.0 (landing page) Pierrick Roger
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz |
| StartedAt: 2024-10-27 10:11:33 -0400 (Sun, 27 Oct 2024) |
| EndedAt: 2024-10-27 10:15:34 -0400 (Sun, 27 Oct 2024) |
| EllapsedTime: 241.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.11.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
accession_tag("<accession>", "</accession>"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed(true)
1 warning generated.
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TagDetector.cpp -o TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/testthat/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-10-27 10:15:28.644][biodb::testContext]
biodb.INFO [2024-10-27 10:15:28.645][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:28.646][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-10-27 10:15:28.646][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:28.646][biodb::testContext]
biodb.INFO [2024-10-27 10:15:28.647][biodb::testThat]
biodb.INFO [2024-10-27 10:15:28.647][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-10-27 10:15:28.647][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:28.647][biodb::testThat]
biodb.INFO [2024-10-27 10:15:28.681][biodb::testContext]
biodb.INFO [2024-10-27 10:15:28.681][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:28.681][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-10-27 10:15:28.682][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:28.682][biodb::testContext]
biodb.INFO [2024-10-27 10:15:28.685][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:28.685][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:28.688][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:28.688][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-27 10:15:28.689][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.690][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-27 10:15:28.697][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.698][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-27 10:15:28.698][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.699][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-27 10:15:28.699][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-27 10:15:28.699][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-27 10:15:28.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.700][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-27 10:15:28.700][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-27 10:15:28.701][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.702][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-27 10:15:28.702][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-27 10:15:28.702][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.703][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-27 10:15:28.703][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-27 10:15:28.703][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-27 10:15:28.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.704][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-27 10:15:28.704][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.705][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-27 10:15:28.705][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-27 10:15:28.705][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-27 10:15:28.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.706][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:28.706][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-27 10:15:28.706][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-27 10:15:28.707][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-27 10:15:28.707][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-27 10:15:28.707][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-27 10:15:28.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.708][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-27 10:15:28.708][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-27 10:15:28.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.709][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-27 10:15:28.709][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-27 10:15:28.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.710][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-27 10:15:28.710][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-27 10:15:28.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.711][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-27 10:15:28.711][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-27 10:15:28.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.712][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-27 10:15:28.712][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-27 10:15:28.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.713][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:28.713][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-27 10:15:28.718][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-27 10:15:28.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.719][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-27 10:15:28.719][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-27 10:15:28.720][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-27 10:15:28.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.722][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-27 10:15:28.731][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.735][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-27 10:15:28.736][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.736][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:28.736][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.736][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.737][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.737][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:28.737][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:28.738][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.738][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-27 10:15:28.738][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:28.738][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.738][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:28.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.740][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:28.740][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.740][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.742][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.742][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.743][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.743][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.743][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.743][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-27 10:15:28.744][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.744][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:28.744][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.744][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:28.745][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.745][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.745][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.745][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.746][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:28.746][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:28.746][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.746][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-27 10:15:28.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:28.747][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:28.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.748][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:28.748][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.749][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.749][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.749][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.749][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.750][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.750][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-27 10:15:28.750][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.750][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-27 10:15:28.751][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.751][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:28.751][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.751][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.752][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.752][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.752][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:28.752][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:28.752][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.753][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-27 10:15:28.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:28.753][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.753][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.753][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.754][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:28.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.754][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:28.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.755][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.755][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.755][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.755][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.756][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.756][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.756][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-27 10:15:28.757][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.757][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:28.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:28.757][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.758][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.758][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.758][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:28.759][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:28.759][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.759][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-27 10:15:28.759][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:28.759][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.760][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.760][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.760][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:28.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.761][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:28.761][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.761][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.761][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.762][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.762][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.762][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.762][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.764][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:28.764][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.781][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-27 10:15:28.784][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-27 10:15:28.784][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-27 10:15:28.785][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-27 10:15:28.785][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-27 10:15:28.785][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:28.786][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:28.786][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:28.786][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-27 10:15:28.787][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:28.787][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:28.787][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-27 10:15:28.788][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:28.788][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:28.788][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-27 10:15:28.789][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:28.789][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-27 10:15:28.789][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-27 10:15:28.789][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-27 10:15:28.790][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-27 10:15:28.790][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-27 10:15:28.790][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-27 10:15:28.791][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-27 10:15:28.791][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-27 10:15:28.791][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-27 10:15:28.792][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-27 10:15:28.792][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-27 10:15:28.792][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-27 10:15:28.793][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-27 10:15:28.793][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-27 10:15:28.793][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-27 10:15:28.794][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-27 10:15:28.794][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-27 10:15:28.794][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-27 10:15:28.794][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-27 10:15:28.795][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-27 10:15:28.795][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-27 10:15:28.795][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-27 10:15:28.796][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-27 10:15:28.796][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-27 10:15:28.796][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-27 10:15:28.797][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-27 10:15:28.797][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-27 10:15:28.797][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-27 10:15:28.798][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-27 10:15:28.798][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-27 10:15:28.798][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-27 10:15:28.799][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-27 10:15:28.799][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-27 10:15:28.799][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-27 10:15:28.799][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-27 10:15:28.800][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-27 10:15:28.800][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-27 10:15:28.800][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-27 10:15:28.801][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-27 10:15:28.801][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-27 10:15:28.801][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-27 10:15:28.802][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-27 10:15:28.802][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-27 10:15:28.802][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-27 10:15:28.803][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-27 10:15:28.803][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-27 10:15:28.803][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-27 10:15:28.804][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-27 10:15:28.804][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-27 10:15:28.804][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-27 10:15:28.804][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-27 10:15:28.805][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-27 10:15:28.805][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-27 10:15:28.805][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-27 10:15:28.806][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-27 10:15:28.806][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-27 10:15:28.806][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-27 10:15:28.807][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-27 10:15:28.807][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-27 10:15:28.807][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-27 10:15:28.808][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-27 10:15:28.808][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-27 10:15:28.808][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-27 10:15:28.809][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-27 10:15:28.809][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-27 10:15:28.809][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-27 10:15:28.809][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-27 10:15:28.811][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-27 10:15:28.812][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:28.813][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:28.813][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.813][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:28.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:28.848][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:28.851][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:28.851][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.851][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.852][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.852][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:28.852][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.852][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-10-27 10:15:28.853][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.853][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.853][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-27 10:15:28.853][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:28.853][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-10-27 10:15:28.854][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.855][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:28.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:28.856][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:28.856][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:28.856][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:28.856][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-10-27 10:15:28.856][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.857][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.857][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:28.857][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:28.859][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-10-27 10:15:28.859][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:28.859][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:28.860][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:28.860][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:28.869][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:28.869][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-10-27 10:15:28.871][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:28.872][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:28.874][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:28.874][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:28.874][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-10-27 10:15:28.874][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-10-27 10:15:28.875][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:28.875][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-10-27 10:15:28.875][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:28.875][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:28.875][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-10-27 10:15:28.875][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-10-27 10:15:28.876][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:28.883][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:28.883][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:28.883][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:28.883][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:28.884][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:28.884][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-10-27 10:15:28.887][biodb::testThat]
biodb.INFO [2024-10-27 10:15:28.887][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-10-27 10:15:28.887][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:28.887][biodb::testThat]
biodb.TRACE[2024-10-27 10:15:28.890][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-10-27 10:15:28.890][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:28.891][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:28.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:28.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:28.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:28.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:28.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:28.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:28.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:28.901][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:28.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:28.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.902][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.906][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:28.906][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:28.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.907][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.914][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.915][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.915][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.916][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.917][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.917][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.918][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.919][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.921][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.921][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.921][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.923][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.927][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.929][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.929][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.931][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.931][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.931][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:28.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.933][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:28.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:28.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:28.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.935][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:28.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.937][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.939][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.940][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:28.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:28.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.940][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.942][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:28.942][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:28.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.942][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.943][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:28.944][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:28.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.944][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.944][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.945][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:28.945][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.946][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.946][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:28.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:28.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:28.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:28.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:28.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.959][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.961][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.962][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:28.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.963][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:28.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:28.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:28.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.979][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:28.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:28.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:28.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:28.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:28.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:28.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:28.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:28.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.002][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.010][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.019][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.021][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.023][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.030][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-10-27 10:15:29.031][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.059][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.062][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.065][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.065][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.068][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.074][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.074][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.075][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.081][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.087][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.088][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.094][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.094][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.100][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.101][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.107][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.108][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.109][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.109][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.109][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.115][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.115][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.119][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.120][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.121][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.121][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.122][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.127][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.128][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.128][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.134][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.134][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.134][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.142][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.143][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.148][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.149][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.149][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.155][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.155][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.155][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.162][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.162][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.168][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.175][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.176][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.176][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.176][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.180][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.181][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.181][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.182][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.183][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.183][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.184][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.186][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.187][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.187][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.187][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.189][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.189][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.191][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.191][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.193][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.193][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.193][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.194][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.195][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.195][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.197][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.199][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.200][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.200][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.201][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.202][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.202][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.203][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.205][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.207][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.208][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.210][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.211][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.212][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.213][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.213][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.214][ef$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:29.216][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.216][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-10-27 10:15:29.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.216][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:29.220][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-10-27 10:15:29.223][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.INFO [2024-10-27 10:15:29.224][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34" for "hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34".
biodb.DEBUG[2024-10-27 10:15:29.225][self$isDownloaded] Database hmdb.metabolites has not yet been downloaded.
biodb.INFO [2024-10-27 10:15:29.225][self$download] Downloading whole database of hmdb.metabolites.
biodb.INFO [2024-10-27 10:15:29.225][private$doDownload] Downloading HMDB metabolite database at "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" ...
biodb.TRACE[2024-10-27 10:15:29.226][cch$addFilesToCache] Moving files to cache [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.TRACE[2024-10-27 10:15:29.226][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-10-27 10:15:29.227][cch$addFilesToCache] Done adding files.
biodb.DEBUG[2024-10-27 10:15:29.227][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-10-27 10:15:29.227][self$download] Downloading of hmdb.metabolites completed.
biodb.TRACE[2024-10-27 10:15:29.228][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7b171b438f30marker".
biodb.TRACE[2024-10-27 10:15:29.228][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/downloaded.marker".
biodb.DEBUG[2024-10-27 10:15:29.228][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-10-27 10:15:29.229][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-10-27 10:15:29.229][self$download] Extract whole database of hmdb.metabolites.
biodb.INFO [2024-10-27 10:15:29.229][private$doExtractDownload] Extracting content of downloaded',
' HMDB metabolite database...
biodb.DEBUG[2024-10-27 10:15:29.230][self$getDownloadPath] Download path of hmdb.metabolites is "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip".
biodb.DEBUG[2024-10-27 10:15:29.230][private$doExtractDownload] Unzipping /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp...
biodb.DEBUG[2024-10-27 10:15:29.234][private$findXmlDatabaseFile] Found files [1]: "hmdb_two_full_entries.xml" into /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/download.zip.
biodb.DEBUG[2024-10-27 10:15:29.234][private$findXmlDatabaseFile] Found XML file /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml in ZIP file.
biodb.DEBUG[2024-10-27 10:15:29.234][private$doExtractDownload] Delete existing entry files in cache system.
biodb.DEBUG[2024-10-27 10:15:29.235][private$doExtractDownload] Extract entries from XML file "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/hmdb_two_full_entries.xml", into "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp".
biodb.TRACE[2024-10-27 10:15:29.238][self$addFilesToCache] Moving files to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/HMDB0000002.xml".
biodb.TRACE[2024-10-27 10:15:29.238][private$doAddFilesToCache] Destination files are [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-10-27 10:15:29.238][self$addFilesToCache] Done adding files.
biodb.DEBUG[2024-10-27 10:15:29.239][private$doExtractDownload] Delete extracted database.
biodb.TRACE[2024-10-27 10:15:29.239][self$addFilesToCache] Moving files to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/tmp/marker7b17706da64bmarker".
biodb.TRACE[2024-10-27 10:15:29.240][private$doAddFilesToCache] Destination files are [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/extracted.marker".
biodb.DEBUG[2024-10-27 10:15:29.240][self$addFilesToCache] Done adding files.
biodb.TRACE[2024-10-27 10:15:29.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-10-27 10:15:29.240][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-27 10:15:29.241][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-10-27 10:15:29.241][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:29.247][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:29.248][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:29.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:29.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:29.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:29.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:29.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:29.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:29.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:29.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.252][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.254][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.254][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.254][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.258][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.258][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.258][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.260][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.260][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.260][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.262][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.263][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.263][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.264][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.265][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.266][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.267][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.269][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.269][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.270][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.271][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.271][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.272][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.273][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.275][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.277][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.278][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.280][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.280][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.281][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.282][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.282][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.283][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.284][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.285][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:29.285][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.286][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.286][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.292][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:29.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.294][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:29.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:29.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:29.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.320][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:29.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:29.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:29.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.345][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:29.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.355][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-10-27 10:15:29.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-10-27 10:15:29.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-10-27 10:15:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-10-27 10:15:29.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-10-27 10:15:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-10-27 10:15:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-10-27 10:15:29.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:29.360][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.360][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-10-27 10:15:29.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.361][biodb::testThat]
biodb.TRACE[2024-10-27 10:15:29.361][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.362][ef$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.362][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-10-27 10:15:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.370][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.373][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-10-27 10:15:29.373][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-10-27 10:15:29.373][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-10-27 10:15:29.374][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-10-27 10:15:29.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.374][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.375][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:29.375][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.375][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:29.376][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:29.376][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:29.376][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:29.376][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:29.377][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:29.377][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.381][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:29.381][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:29.381][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-10-27 10:15:29.386][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.386][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.386][ef$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.387][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-10-27 10:15:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.393][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-10-27 10:15:29.407][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-10-27 10:15:29.407][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-10-27 10:15:29.407][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-10-27 10:15:29.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.411][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.412][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:29.412][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.412][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:29.418][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:29.418][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:29.418][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:29.419][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:29.419][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:29.419][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.421][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:29.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:29.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.423][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:29.423][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:29.424][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-10-27 10:15:29.427][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.427][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.427][ef$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.428][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-10-27 10:15:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.432][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.434][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-10-27 10:15:29.435][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-10-27 10:15:29.435][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-10-27 10:15:29.435][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-10-27 10:15:29.435][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.436][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.436][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:29.436][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.437][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:29.437][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:29.437][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:29.437][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:29.438][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:29.438][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:29.438][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.439][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.440][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:29.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.442][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:29.442][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:29.442][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-10-27 10:15:29.446][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.446][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-10-27 10:15:29.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.447][biodb::testThat]
biodb.TRACE[2024-10-27 10:15:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.457][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-10-27 10:15:29.457][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-10-27 10:15:29.458][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-10-27 10:15:29.458][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.458][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.459][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:29.459][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:29.459][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:29.460][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:29.460][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:29.460][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:29.460][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:29.461][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:29.461][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:29.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:29.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:29.465][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:29.465][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-10-27 10:15:29.469][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.469][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-10-27 10:15:29.469][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.470][biodb::testThat]
biodb.TRACE[2024-10-27 10:15:29.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.477][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.478][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-10-27 10:15:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-10-27 10:15:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:29.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-10-27 10:15:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:29.497][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.497][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-10-27 10:15:29.497][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.497][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.499][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.499][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-10-27 10:15:29.500][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.500][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.502][biodb::testThat]
biodb.INFO [2024-10-27 10:15:29.502][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-10-27 10:15:29.502][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:29.503][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:29.503][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-10-27 10:15:30.823][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-10-27 10:15:30.928][biodb::testThat]
biodb.INFO [2024-10-27 10:15:30.928][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-10-27 10:15:30.928][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:30.929][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.338][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-10-27 10:15:31.358][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.359][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.360][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.360][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.360][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.360][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.361][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.361][ef$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:31.362][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.362][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-10-27 10:15:31.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.362][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.363][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-10-27 10:15:31.379][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-10-27 10:15:31.379][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.380][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-10-27 10:15:31.384][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-10-27 10:15:31.384][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-10-27 10:15:31.385][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-10-27 10:15:31.385][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:31.385][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.386][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:31.386][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:31.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:31.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:31.389][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:31.407][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-10-27 10:15:31.407][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-10-27 10:15:31.412][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.412][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-10-27 10:15:31.412][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.412][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.415][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-10-27 10:15:31.415][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-10-27 10:15:31.415][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-10-27 10:15:31.416][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.416][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-10-27 10:15:31.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-10-27 10:15:31.417][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-10-27 10:15:31.417][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-10-27 10:15:31.418][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:31.418][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.418][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:31.418][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:31.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:31.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:31.422][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:31.429][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-10-27 10:15:31.429][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-10-27 10:15:31.429][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-10-27 10:15:31.434][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.435][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-10-27 10:15:31.435][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.435][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.441][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.442][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-10-27 10:15:31.442][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.442][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.443][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.443][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:31.444][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.444][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:31.444][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:31.444][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:31.445][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:31.445][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-10-27 10:15:31.447][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.447][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-10-27 10:15:31.447][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.448][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.448][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.449][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:31.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.449][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:31.450][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:31.450][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:31.450][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:31.450][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-10-27 10:15:31.452][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.453][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.453][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.454][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.454][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.454][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.455][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.455][ef$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:31.455][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-27 10:15:31.456][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-10-27 10:15:31.458][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-10-27 10:15:31.458][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-27 10:15:31.458][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.458][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.459][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-27 10:15:31.460][biodb::testContext]
biodb.INFO [2024-10-27 10:15:31.460][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:31.461][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-10-27 10:15:31.461][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:31.461][biodb::testContext]
biodb.INFO [2024-10-27 10:15:31.462][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:31.463][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:31.465][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.466][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-27 10:15:31.466][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.467][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-27 10:15:31.467][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.468][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-27 10:15:31.468][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.469][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-27 10:15:31.469][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-27 10:15:31.469][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.470][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-27 10:15:31.470][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-27 10:15:31.471][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.471][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-27 10:15:31.472][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.472][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-27 10:15:31.473][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-27 10:15:31.473][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-27 10:15:31.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.474][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-27 10:15:31.474][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.475][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-27 10:15:31.475][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-27 10:15:31.475][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.476][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:31.476][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-27 10:15:31.476][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-27 10:15:31.477][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-27 10:15:31.477][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-27 10:15:31.477][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-27 10:15:31.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.478][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-27 10:15:31.478][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-27 10:15:31.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.479][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-27 10:15:31.479][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-27 10:15:31.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.480][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-27 10:15:31.480][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.481][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-27 10:15:31.481][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-27 10:15:31.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.482][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-27 10:15:31.482][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-27 10:15:31.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.483][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:31.483][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-27 10:15:31.487][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-27 10:15:31.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.488][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-27 10:15:31.488][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-27 10:15:31.489][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-27 10:15:31.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.489][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-27 10:15:31.490][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.490][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-27 10:15:31.490][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.491][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.491][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.491][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.491][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.491][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.492][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:31.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.492][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.494][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-27 10:15:31.494][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.494][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.495][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.496][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.496][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.496][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.496][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.497][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.497][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.497][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.497][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.498][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-27 10:15:31.498][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.498][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:31.498][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.499][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.499][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.499][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.499][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.499][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.500][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:31.500][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.500][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.500][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:31.501][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.502][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.503][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.503][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.503][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.503][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.503][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.504][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.504][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-27 10:15:31.504][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.505][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-27 10:15:31.505][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.505][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.505][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.505][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.506][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.506][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.506][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:31.506][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.506][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.507][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-27 10:15:31.507][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.507][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.507][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.508][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.508][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.508][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.508][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.508][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.509][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.509][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.509][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.509][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.509][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.510][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.510][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.510][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.510][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-27 10:15:31.511][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.511][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:31.511][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.511][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.512][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.512][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.512][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.512][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.512][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:31.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.513][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.513][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-27 10:15:31.513][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.513][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.514][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.514][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.514][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.515][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.515][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.515][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.516][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.516][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.516][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.516][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.516][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.517][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.518][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.535][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-27 10:15:31.535][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-27 10:15:31.536][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-27 10:15:31.536][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-27 10:15:31.536][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-27 10:15:31.537][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:31.537][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:31.537][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:31.538][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-27 10:15:31.538][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:31.538][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:31.538][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-27 10:15:31.539][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:31.539][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:31.539][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-27 10:15:31.540][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:31.540][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-27 10:15:31.540][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-27 10:15:31.541][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-27 10:15:31.542][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-27 10:15:31.543][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-27 10:15:31.543][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-27 10:15:31.543][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-27 10:15:31.544][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-27 10:15:31.544][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-27 10:15:31.544][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-27 10:15:31.545][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-27 10:15:31.545][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-27 10:15:31.545][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-27 10:15:31.546][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-27 10:15:31.546][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-27 10:15:31.546][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-27 10:15:31.546][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-27 10:15:31.547][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-27 10:15:31.547][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-27 10:15:31.547][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-27 10:15:31.548][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-27 10:15:31.548][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-27 10:15:31.548][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-27 10:15:31.549][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-27 10:15:31.549][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-27 10:15:31.549][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-27 10:15:31.550][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-27 10:15:31.550][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-27 10:15:31.550][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-27 10:15:31.551][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-27 10:15:31.551][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-27 10:15:31.551][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-27 10:15:31.551][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-27 10:15:31.552][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-27 10:15:31.552][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-27 10:15:31.552][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-27 10:15:31.553][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-27 10:15:31.553][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-27 10:15:31.553][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-27 10:15:31.554][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-27 10:15:31.554][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-27 10:15:31.554][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-27 10:15:31.554][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-27 10:15:31.555][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-27 10:15:31.555][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-27 10:15:31.555][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-27 10:15:31.556][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-27 10:15:31.556][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-27 10:15:31.556][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-27 10:15:31.557][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-27 10:15:31.557][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-27 10:15:31.557][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-27 10:15:31.558][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-27 10:15:31.558][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-27 10:15:31.558][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-27 10:15:31.559][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-27 10:15:31.559][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-27 10:15:31.559][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-27 10:15:31.559][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-27 10:15:31.560][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-27 10:15:31.560][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-27 10:15:31.560][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-27 10:15:31.561][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-27 10:15:31.561][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-27 10:15:31.561][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-27 10:15:31.562][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-27 10:15:31.562][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-27 10:15:31.562][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-27 10:15:31.563][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:31.563][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.563][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.564][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.589][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:31.589][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.591][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.591][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.591][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.592][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.592][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.592][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-10-27 10:15:31.592][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.593][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-27 10:15:31.593][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.593][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.593][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-10-27 10:15:31.594][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-10-27 10:15:31.595][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-27 10:15:31.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.595][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.595][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.596][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.596][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.596][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:31.596][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-10-27 10:15:31.596][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.596][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.597][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.597][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.597][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-10-27 10:15:31.597][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:31.598][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:31.598][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:31.599][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:31.599][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.600][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-10-27 10:15:31.600][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.600][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.600][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.601][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.601][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-10-27 10:15:31.601][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-10-27 10:15:31.601][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:31.601][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-10-27 10:15:31.602][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.602][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.602][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-10-27 10:15:31.602][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-10-27 10:15:31.602][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.603][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.603][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.603][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.604][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.604][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.604][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-10-27 10:15:31.604][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.605][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-10-27 10:15:31.605][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.605][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.606][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.606][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.607][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:31.607][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.607][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:31.608][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:31.608][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:31.608][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:31.608][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:31.609][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-10-27 10:15:31.611][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.611][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-10-27 10:15:31.611][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.611][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.612][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-10-27 10:15:31.612][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-10-27 10:15:31.612][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.613][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-10-27 10:15:31.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-10-27 10:15:31.613][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-27 10:15:31.614][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-10-27 10:15:31.614][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:31.614][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:31.615][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:31.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:31.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:31.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.620][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.621][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.622][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.622][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.623][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.623][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.624][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.624][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.624][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.626][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.626][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.626][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.627][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.628][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.628][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.629][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.630][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.630][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.631][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.631][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.632][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.633][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.634][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.635][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.637][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.637][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.637][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.638][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.639][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.640][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.640][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.641][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.642][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.646][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.647][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.648][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.649][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.650][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.651][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.651][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.653][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:31.653][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.653][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.657][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.659][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.699][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.700][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.708][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.714][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:31.724][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-10-27 10:15:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-10-27 10:15:31.729][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-27 10:15:31.729][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-10-27 10:15:31.729][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-10-27 10:15:31.729][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-27 10:15:31.730][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.730][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.730][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-27 10:15:31.732][biodb::testContext]
biodb.INFO [2024-10-27 10:15:31.732][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:31.732][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-10-27 10:15:31.732][biodb::testContext] ********************************************************************************
biodb.INFO [2024-10-27 10:15:31.733][biodb::testContext]
biodb.INFO [2024-10-27 10:15:31.734][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:31.734][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:31.736][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.736][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-10-27 10:15:31.736][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.737][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-10-27 10:15:31.737][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.738][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-10-27 10:15:31.738][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.739][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-10-27 10:15:31.739][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-10-27 10:15:31.739][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.740][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-10-27 10:15:31.740][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-10-27 10:15:31.741][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.742][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-10-27 10:15:31.742][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.743][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-10-27 10:15:31.743][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-10-27 10:15:31.743][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-10-27 10:15:31.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.745][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-10-27 10:15:31.746][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.746][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-10-27 10:15:31.747][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-10-27 10:15:31.747][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-10-27 10:15:31.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.748][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:31.748][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-10-27 10:15:31.748][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-10-27 10:15:31.748][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-10-27 10:15:31.749][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-10-27 10:15:31.749][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-10-27 10:15:31.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.750][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-10-27 10:15:31.750][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-10-27 10:15:31.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.751][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-10-27 10:15:31.751][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-10-27 10:15:31.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.752][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-10-27 10:15:31.752][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-10-27 10:15:31.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.753][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-10-27 10:15:31.753][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-10-27 10:15:31.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.754][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-10-27 10:15:31.754][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-10-27 10:15:31.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.755][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-10-27 10:15:31.755][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-10-27 10:15:31.759][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-10-27 10:15:31.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.761][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-10-27 10:15:31.761][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-10-27 10:15:31.761][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-10-27 10:15:31.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.762][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-10-27 10:15:31.762][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.763][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-10-27 10:15:31.763][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.763][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.764][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.764][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.764][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.764][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:31.765][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.765][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.765][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-10-27 10:15:31.765][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.766][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.767][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.767][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.768][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.768][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.768][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.768][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.769][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.769][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-10-27 10:15:31.769][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.770][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:31.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.770][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.770][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.771][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.771][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.771][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.771][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:31.772][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.772][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.772][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-10-27 10:15:31.772][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.772][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.773][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.775][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.776][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.776][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.777][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.777][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.777][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.777][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.777][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.778][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-10-27 10:15:31.778][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.778][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-10-27 10:15:31.779][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.779][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.779][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.779][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.780][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.780][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.780][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-10-27 10:15:31.780][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.781][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.781][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-10-27 10:15:31.781][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.781][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.781][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.782][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.782][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.782][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.783][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.783][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.783][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.784][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.784][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.784][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.784][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.785][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-10-27 10:15:31.785][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.785][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-10-27 10:15:31.785][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.786][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.786][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.786][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.786][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.787][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.787][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-10-27 10:15:31.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.787][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.787][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-10-27 10:15:31.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.788][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.788][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.788][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.789][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-10-27 10:15:31.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.789][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.789][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.790][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.790][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.790][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.790][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.790][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.791][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.791][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.791][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.791][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.805][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.811][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-10-27 10:15:31.811][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-10-27 10:15:31.812][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-10-27 10:15:31.812][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-10-27 10:15:31.812][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-10-27 10:15:31.813][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:31.813][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:31.813][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:31.814][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-10-27 10:15:31.814][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:31.814][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:31.815][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-10-27 10:15:31.815][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-10-27 10:15:31.815][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-10-27 10:15:31.816][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-10-27 10:15:31.816][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:31.816][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-10-27 10:15:31.817][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-10-27 10:15:31.817][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-10-27 10:15:31.817][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-10-27 10:15:31.818][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-10-27 10:15:31.818][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-10-27 10:15:31.818][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-10-27 10:15:31.819][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-10-27 10:15:31.819][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-10-27 10:15:31.819][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-10-27 10:15:31.820][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-10-27 10:15:31.820][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-10-27 10:15:31.820][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-10-27 10:15:31.821][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-10-27 10:15:31.821][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-10-27 10:15:31.821][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-10-27 10:15:31.822][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-10-27 10:15:31.822][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-10-27 10:15:31.822][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-10-27 10:15:31.823][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-10-27 10:15:31.823][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-10-27 10:15:31.825][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-10-27 10:15:31.826][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-10-27 10:15:31.826][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-10-27 10:15:31.826][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-10-27 10:15:31.827][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-10-27 10:15:31.827][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-10-27 10:15:31.827][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-10-27 10:15:31.828][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-10-27 10:15:31.828][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-10-27 10:15:31.828][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-10-27 10:15:31.829][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-10-27 10:15:31.829][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-10-27 10:15:31.829][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-10-27 10:15:31.830][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-10-27 10:15:31.830][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-10-27 10:15:31.830][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-10-27 10:15:31.831][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-10-27 10:15:31.831][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-10-27 10:15:31.831][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-10-27 10:15:31.832][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-10-27 10:15:31.832][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-10-27 10:15:31.832][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-10-27 10:15:31.833][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-10-27 10:15:31.833][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-10-27 10:15:31.833][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-10-27 10:15:31.834][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-10-27 10:15:31.834][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-10-27 10:15:31.834][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-10-27 10:15:31.835][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-10-27 10:15:31.835][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-10-27 10:15:31.835][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-10-27 10:15:31.836][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-10-27 10:15:31.836][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-10-27 10:15:31.836][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-10-27 10:15:31.837][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-10-27 10:15:31.837][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-10-27 10:15:31.837][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-10-27 10:15:31.838][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-10-27 10:15:31.838][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-10-27 10:15:31.838][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-10-27 10:15:31.839][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-10-27 10:15:31.839][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-10-27 10:15:31.839][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-10-27 10:15:31.840][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-10-27 10:15:31.840][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-10-27 10:15:31.840][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-10-27 10:15:31.841][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-10-27 10:15:31.841][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-10-27 10:15:31.841][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-10-27 10:15:31.842][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.842][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.849][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-10-27 10:15:31.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:31.868][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-10-27 10:15:31.868][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.869][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.869][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.869][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.870][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-10-27 10:15:31.870][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.870][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-10-27 10:15:31.870][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.871][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.871][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-10-27 10:15:31.871][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-10-27 10:15:31.871][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.871][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-10-27 10:15:31.872][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-10-27 10:15:31.873][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-10-27 10:15:31.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.875][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-10-27 10:15:31.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-10-27 10:15:31.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-10-27 10:15:31.875][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-10-27 10:15:31.876][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:31.876][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-10-27 10:15:31.876][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.876][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.876][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-10-27 10:15:31.877][self$setPropertyValue]
biodb.DEBUG[2024-10-27 10:15:31.877][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-10-27 10:15:31.877][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-10-27 10:15:31.878][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-10-27 10:15:31.878][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-10-27 10:15:31.878][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-10-27 10:15:31.879][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.879][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-10-27 10:15:31.880][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.880][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.880][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.880][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.881][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-10-27 10:15:31.881][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-10-27 10:15:31.881][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-10-27 10:15:31.881][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-10-27 10:15:31.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-10-27 10:15:31.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-10-27 10:15:31.882][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-10-27 10:15:31.882][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-10-27 10:15:31.882][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-10-27 10:15:31.883][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.883][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.883][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.883][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-10-27 10:15:31.884][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-10-27 10:15:31.884][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-10-27 10:15:31.884][biodb::testThat]
biodb.INFO [2024-10-27 10:15:31.884][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-10-27 10:15:31.885][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-10-27 10:15:31.885][biodb::testThat]
biodb.DEBUG[2024-10-27 10:15:31.885][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-10-27 10:15:31.886][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-10-27 10:15:31.886][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-10-27 10:15:31.887][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.887][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.887][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:31.888][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.888][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:31.888][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:31.889][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:31.889][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:31.889][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:31.889][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:31.889][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-10-27 10:15:31.890][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-10-27 10:15:31.890][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-10-27 10:15:31.891][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:31.891][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-10-27 10:15:31.891][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-10-27 10:15:31.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-27 10:15:31.892][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-10-27 10:15:31.892][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:31.893][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:31.893][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:31.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:31.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:31.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:31.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:31.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:31.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:31.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:31.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.898][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.899][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.899][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.900][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.903][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.903][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.904][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.905][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.905][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.905][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.907][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.908][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.909][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.909][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.911][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.913][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.914][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.914][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.916][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.916][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.917][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.918][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.918][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.919][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.920][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.922][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.924][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.926][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.926][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.927][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.927][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.928][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.928][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.929][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.929][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.930][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.930][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.931][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.932][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:31.932][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.932][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.933][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:31.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.940][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.961][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:31.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:31.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:31.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:31.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.969][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.971][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:31.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.984][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.988][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:31.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.992][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:31.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:31.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:31.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.998][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:31.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.009][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-10-27 10:15:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.012][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.013][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:32.013][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:32.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:32.016][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-10-27 10:15:32.016][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-10-27 10:15:32.017][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.017][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-10-27 10:15:32.018][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-10-27 10:15:32.018][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-10-27 10:15:32.018][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-10-27 10:15:32.019][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-10-27 10:15:32.019][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-10-27 10:15:32.019][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-10-27 10:15:32.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:32.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.024][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.025][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.025][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.026][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.027][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.027][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.028][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.029][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.029][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.030][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.031][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.033][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.035][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.035][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.036][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.037][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.037][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.039][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.041][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.041][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.041][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.043][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.043][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:32.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:32.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.045][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.046][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:32.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:32.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.047][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:32.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.049][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.050][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.050][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.051][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.053][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.054][ef$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.054][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.055][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:32.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:32.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.057][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:32.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.058][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:32.060][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.061][ef$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-10-27 10:15:32.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.067][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-10-27 10:15:32.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.068][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-10-27 10:15:32.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.072][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-10-27 10:15:32.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-10-27 10:15:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-10-27 10:15:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-10-27 10:15:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-10-27 10:15:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:32.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-10-27 10:15:32.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-10-27 10:15:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:32.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:32.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:32.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-10-27 10:15:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-10-27 10:15:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-10-27 10:15:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-10-27 10:15:32.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-10-27 10:15:32.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.109][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-10-27 10:15:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:32.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-10-27 10:15:32.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-10-27 10:15:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-10-27 10:15:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-10-27 10:15:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-10-27 10:15:32.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-10-27 10:15:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-10-27 10:15:32.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-10-27 10:15:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-10-27 10:15:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.134][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-10-27 10:15:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.140][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:32.140][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:32.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:32.145][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-10-27 10:15:32.145][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-10-27 10:15:32.145][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-10-27 10:15:32.146][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.146][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.147][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:32.147][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.147][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:32.148][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:32.148][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:32.148][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:32.148][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:32.149][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:32.149][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:32.149][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.155][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.156][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:32.156][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:32.156][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.164][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.169][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-10-27 10:15:32.169][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:32.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-10-27 10:15:32.174][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-10-27 10:15:32.174][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-10-27 10:15:32.175][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-10-27 10:15:32.175][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.175][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.176][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-10-27 10:15:32.176][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-10-27 10:15:32.176][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-10-27 10:15:32.177][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-10-27 10:15:32.177][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-10-27 10:15:32.177][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-10-27 10:15:32.178][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-10-27 10:15:32.178][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-10-27 10:15:32.178][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-10-27 10:15:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.186][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-10-27 10:15:32.186][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-10-27 10:15:32.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-10-27 10:15:32.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.190][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-10-27 10:15:32.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-10-27 10:15:32.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-10-27 10:15:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-10-27 10:15:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-10-27 10:15:32.196][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-10-27 10:15:32.196][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-10-27 10:15:32.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-10-27 10:15:32.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-10-27 10:15:32.204][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-10-27 10:15:32.204][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-10-27 10:15:32.205][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-10-27 10:15:32.205][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-10-27 10:15:32.205][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-10-27 10:15:32.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-10-27 10:15:32.206][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-10-27 10:15:32.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-10-27 10:15:32.206][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-10-27 10:15:32.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
2.327 0.125 4.248