Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-11-05 12:08 -0500 (Tue, 05 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 474/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cTRAP 1.24.0  (landing page)
Nuno Saraiva-Agostinho
Snapshot Date: 2024-11-04 13:40 -0500 (Mon, 04 Nov 2024)
git_url: https://git.bioconductor.org/packages/cTRAP
git_branch: RELEASE_3_20
git_last_commit: 738ffa4
git_last_commit_date: 2024-10-29 10:32:37 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for cTRAP on kunpeng2

To the developers/maintainers of the cTRAP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cTRAP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: cTRAP
Version: 1.24.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP
StartedAt: 2024-11-05 00:14:38 -0000 (Tue, 05 Nov 2024)
EndedAt: 2024-11-05 00:16:38 -0000 (Tue, 05 Nov 2024)
EllapsedTime: 120.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP
###
##############################################################################
##############################################################################


* checking for file ‘cTRAP/DESCRIPTION’ ... OK
* preparing ‘cTRAP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cTRAP.Rmd’ using rmarkdown
trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE92742&format=file&file=GSE92742_Broad_LINCS_sig_info.txt.gz'
Content type 'application/octet-stream' length 11124404 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

trying URL 'https://compbio.imm.medicina.ulisboa.pt/public/cTRAP/expressionDrugSensitivityCorCTRP2.1.qs'

Quitting from lines 341-350 [unnamed-chunk-4] (cTRAP.Rmd)
Error: processing vignette 'cTRAP.Rmd' failed with diagnostics:
cannot open URL 'https://compbio.imm.medicina.ulisboa.pt/public/cTRAP/expressionDrugSensitivityCorCTRP2.1.qs'
--- failed re-building ‘cTRAP.Rmd’

SUMMARY: processing the following file failed:
  ‘cTRAP.Rmd’

Error: Vignette re-building failed.
Execution halted