Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-11-05 12:04 -0500 (Tue, 05 Nov 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4503 |
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4506 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4539 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4493 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 650/2289 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
enrichViewNet 1.4.0 (landing page) Astrid Deschênes
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | |||||||||
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the enrichViewNet package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichViewNet.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: enrichViewNet |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings enrichViewNet_1.4.0.tar.gz |
StartedAt: 2024-11-04 23:26:23 -0500 (Mon, 04 Nov 2024) |
EndedAt: 2024-11-04 23:33:32 -0500 (Mon, 04 Nov 2024) |
EllapsedTime: 429.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: enrichViewNet.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings enrichViewNet_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/enrichViewNet.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘enrichViewNet/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘enrichViewNet’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘enrichViewNet’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
enrichViewNet.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL enrichViewNet ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘enrichViewNet’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (enrichViewNet)
enrichViewNet.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(enrichViewNet) > > ## Run all unit tests > test_check("enrichViewNet") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 103 ] > > proc.time() user system elapsed 8.389 0.437 13.186
enrichViewNet.Rcheck/enrichViewNet-Ex.timings
name | user | system | elapsed | |
createBasicEmap | 0.972 | 0.026 | 0.998 | |
createCXJSONForCytoscape | 0.085 | 0.001 | 0.086 | |
createEnrichMap | 0.458 | 0.001 | 0.459 | |
createEnrichMapMultiBasic | 0.590 | 0.023 | 0.614 | |
createEnrichMapMultiComplex | 1.505 | 0.060 | 1.566 | |
createMetaDataSectionCXJSON | 0.001 | 0.000 | 0.001 | |
createMultiEmap | 0.770 | 0.057 | 0.827 | |
createNetwork | 0.043 | 0.004 | 0.048 | |
createNetworkForCytoscape | 0.024 | 0.002 | 0.026 | |
demoGOST | 0.035 | 0.019 | 1.979 | |
extractInformationWhenIntersection | 0.027 | 0.001 | 0.029 | |
extractInformationWhenNoIntersection | 0.193 | 0.020 | 3.689 | |
extractNodesAndEdgesInformation | 0.026 | 0.000 | 0.026 | |
filterResults | 0.002 | 0.000 | 0.002 | |
formatInformationForCXJSON | 0.028 | 0.004 | 0.032 | |
isCytoscapeRunning | 0.003 | 0.000 | 0.003 | |
manageNameDuplicationInEmap | 0.004 | 0.000 | 0.003 | |
manageQueryDuplicationInEmap | 0 | 0 | 0 | |
parentalNapaVsDMSODEG | 0.254 | 0.025 | 3.453 | |
parentalNapaVsDMSOEnrichment | 0.363 | 0.007 | 0.371 | |
removeRootTerm | 0.004 | 0.000 | 0.005 | |
rosaNapaVsDMSODEG | 0.164 | 0.028 | 3.822 | |
rosaNapaVsDMSOEnrichment | 0.330 | 0.020 | 0.349 | |
validateCreateEnrichMapArguments | 0.001 | 0.002 | 0.002 | |
validateCreateEnrichMapMultiArguments | 0.007 | 0.002 | 0.009 | |
validateCreateEnrichMapMultiComplexArg | 0.008 | 0.002 | 0.009 | |
validateCreateEnrichMapSubSectionArguments | 0 | 0 | 0 | |
validateCreateNetworkArguments | 0.002 | 0.000 | 0.002 | |