Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-27 11:43 -0400 (Tue, 27 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4415 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 718/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
flowClust 3.43.0 (landing page) Greg Finak
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
To the developers/maintainers of the flowClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: flowClust |
Version: 3.43.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowClust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowClust_3.43.0.tar.gz |
StartedAt: 2024-08-26 20:33:38 -0400 (Mon, 26 Aug 2024) |
EndedAt: 2024-08-26 20:38:31 -0400 (Mon, 26 Aug 2024) |
EllapsedTime: 293.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: flowClust.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:flowClust.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings flowClust_3.43.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘flowClust/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘flowClust’ version ‘3.43.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘flowClust’ can be installed ... WARNING Found the following significant warnings: coulomb.c:994:17: warning: variable 'G_lam_G' is uninitialized when used here [-Wuninitialized] coulomb.c:996:17: warning: variable 'Gp_lam_G' is uninitialized when used here [-Wuninitialized] exp.c:216:83: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] gamma.c:1614:54: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value] hyperg_1F1.c:1003:44: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1034:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1057:24: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1086:40: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1113:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1169:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1813:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1813:68: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1817:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_1F1.c:1817:66: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:285:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:527:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] hyperg_U.c:861:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:871:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:913:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:947:39: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:998:35: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:1042:48: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:1108:49: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:1439:57: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] hyperg_U.c:1512:52: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] legendre_poly.c:544:67: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] legendre_poly.c:582:93: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] poch.c:164:46: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] poch.c:179:47: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] ./absdev_source.c:41:28: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] ./wabsdev_source.c:43:35: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] ldfrexp.c:63:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] ldfrexp.c:88:12: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] See ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck/00install.out’ for details. * used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Problems with news in ‘NEWS’: Cannot process chunk/lines: BUG FIXES * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .flowClustK: no visible global function definition for ‘var’ .flowClustK: no visible global function definition for ‘qf’ .flowClustK: no visible global function definition for ‘qchisq’ .flowClustK: no visible global function definition for ‘quantile’ .flowClustK: no visible global function definition for ‘kmeans’ .hist.flowClust: no visible global function definition for ‘hist’ dmvt: no visible global function definition for ‘mahalanobis’ hist.flowClust: no visible global function definition for ‘hist’ hist.flowClust: no visible global function definition for ‘curve’ hist.flowClust: no visible global function definition for ‘stripchart’ hist.flowClustList: no visible global function definition for ‘hist’ plot,flowClust-missing: no visible global function definition for ‘gray’ plot,flowClust-missing: no visible global function definition for ‘hist’ plot,flowClust-missing: no visible global function definition for ‘title’ plot,flowClust-missing: no visible global function definition for ‘points’ plot,flowClust-missing: no visible global function definition for ‘qf’ plot,flowClust-missing: no visible global function definition for ‘qchisq’ plot,flowClustList-missing: no visible global function definition for ‘gray’ plot,flowDens-missing: no visible global function definition for ‘contour’ plot,flowDens-missing: no visible global function definition for ‘heat.colors’ plot,flowDens-missing: no visible global function definition for ‘rainbow’ plot,flowDens-missing: no visible global function definition for ‘terrain.colors’ plot,flowDens-missing: no visible global function definition for ‘topo.colors’ plot,flowDens-missing: no visible global function definition for ‘cm.colors’ plot,flowDens-missing: no visible global function definition for ‘gray’ plot,flowDens-missing: no visible global function definition for ‘image’ plot,flowFrame-tmixFilterResult: no visible global function definition for ‘hist’ ruleOutliers<-,flowClust-list: no visible global function definition for ‘qf’ ruleOutliers<-,flowClust-list: no visible global function definition for ‘qchisq’ Undefined global functions or variables: cm.colors contour curve gray heat.colors hist image kmeans mahalanobis points qchisq qf quantile rainbow stripchart terrain.colors title topo.colors var Consider adding importFrom("grDevices", "cm.colors", "gray", "heat.colors", "rainbow", "terrain.colors", "topo.colors") importFrom("graphics", "contour", "curve", "hist", "image", "points", "stripchart", "title") importFrom("stats", "kmeans", "mahalanobis", "qchisq", "qf", "quantile", "var") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... WARNING Missing link or links in Rd file 'flowClust.Rd': ‘SimulateMixture’ See section 'Cross-references' in the 'Writing R Extensions' manual. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available File ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/flowClust/libs/flowClust.so’: Found ‘___stderrp’, possibly from ‘stderr’ (C) Found ‘___stdoutp’, possibly from ‘stdout’ (C) Found ‘_abort’, possibly from ‘abort’ (C) Found ‘_printf’, possibly from ‘printf’ (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 5 NOTEs See ‘/Users/biocbuild/bbs-3.20-bioc/meat/flowClust.Rcheck/00check.log’ for details.
flowClust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL flowClust ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘flowClust’ ... ** using staged installation configure: Using bundled GSL. configure: Searching for the compilers specified by R. checking for gcc... clang -arch x86_64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch x86_64 accepts -g... yes checking for clang -arch x86_64 option to accept ISO C89... none needed checking how to run the C preprocessor... clang -arch x86_64 -E untarring gsl... configure: Preparing to compile GSL. configure: Configuring bundled GSL. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... ./install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking whether make sets $(MAKE)... (cached) yes checking build system type... x86_64-apple-darwin21.6.0 checking host system type... x86_64-apple-darwin21.6.0 checking for gcc... clang -arch x86_64 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang -arch x86_64 accepts -g... yes checking for clang -arch x86_64 option to accept ISO C89... none needed checking how to run the C preprocessor... clang -arch x86_64 -E checking whether ln -s works... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by clang -arch x86_64... /Library/Developer/CommandLineTools/usr/bin/ld checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... rm: conftest.dSYM: is a directory BSD nm checking the maximum length of command line arguments... 786432 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from clang -arch x86_64 object... rm: conftest.dSYM: is a directory ok checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if clang -arch x86_64 supports -fno-rtti -fno-exceptions... yes checking for clang -arch x86_64 option to produce PIC... -fno-common -DPIC checking if clang -arch x86_64 PIC flag -fno-common -DPIC works... yes checking if clang -arch x86_64 static flag -static works... no checking if clang -arch x86_64 supports -c -o file.o... yes checking if clang -arch x86_64 supports -c -o file.o... (cached) yes checking whether the clang -arch x86_64 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin21.6.0 dyld checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for size_t... yes checking for working volatile... yes checking for inline... inline checking whether char is unsigned... no checking for GNU-style extern inline... no checking for C99-style inline... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking for vprintf... yes checking for _doprnt... no checking for memcpy... yes checking for memmove... yes checking for strdup... yes checking for strtol... yes checking for strtoul... yes checking for EXIT_SUCCESS and EXIT_FAILURE... yes checking for cos in -lm... yes checking whether feenableexcept is declared... no checking whether fesettrapenable is declared... no checking whether hypot is declared... yes checking whether expm1 is declared... yes checking whether acosh is declared... yes checking whether asinh is declared... yes checking whether atanh is declared... yes checking whether ldexp is declared... yes checking whether frexp is declared... yes checking whether isinf is declared... yes checking whether isfinite is declared... yes checking whether finite is declared... yes checking whether isnan is declared... yes checking whether log1p is declared... yes checking for long double stdio... yes checking for extended floating point registers... yes checking for IEEE arithmetic interface type... unknown checking for IEEE compiler flags... none checking for IEEE comparisons... no checking for IEEE denormalized values... no configure: creating ./config.status config.status: creating gsl_version.h config.status: creating gsl.spec config.status: creating gsl/Makefile config.status: creating block/Makefile config.status: creating matrix/Makefile config.status: creating vector/Makefile config.status: creating rng/Makefile config.status: creating randist/Makefile config.status: creating cdf/Makefile config.status: creating cblas/Makefile config.status: creating specfunc/Makefile config.status: creating linalg/Makefile config.status: creating statistics/Makefile config.status: creating blas/Makefile config.status: creating roots/Makefile config.status: creating err/Makefile config.status: creating min/Makefile config.status: creating permutation/Makefile config.status: creating complex/Makefile config.status: creating sys/Makefile config.status: creating eigen/Makefile config.status: creating Makefile config.status: creating config.h config.status: executing libtool commands Making install in gsl make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. Making install in block /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c -fno-common -DPIC -o .libs/init.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c -fno-common -DPIC -o .libs/file.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o block.lo block.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c block.c -fno-common -DPIC -o .libs/block.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslblock.la init.lo file.lo block.lo -lm libtool: link: ar cru .libs/libgslblock.a .libs/init.o .libs/file.o .libs/block.o libtool: link: ranlib .libs/libgslblock.a libtool: link: ( cd ".libs" && rm -f "libgslblock.la" && ln -s "../libgslblock.la" "libgslblock.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_block.h gsl_block_char.h gsl_block_complex_double.h gsl_block_complex_float.h gsl_block_complex_long_double.h gsl_block_double.h gsl_block_float.h gsl_block_int.h gsl_block_long.h gsl_block_long_double.h gsl_block_short.h gsl_block_uchar.h gsl_block_uint.h gsl_block_ulong.h gsl_block_ushort.h gsl_check_range.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in matrix /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c -fno-common -DPIC -o .libs/init.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o matrix.lo matrix.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c matrix.c -fno-common -DPIC -o .libs/matrix.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c -fno-common -DPIC -o .libs/file.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rowcol.lo rowcol.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rowcol.c -fno-common -DPIC -o .libs/rowcol.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o swap.lo swap.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c swap.c -fno-common -DPIC -o .libs/swap.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o copy.lo copy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c copy.c -fno-common -DPIC -o .libs/copy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c -fno-common -DPIC -o .libs/minmax.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o prop.lo prop.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prop.c -fno-common -DPIC -o .libs/prop.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o oper.lo oper.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c oper.c -fno-common -DPIC -o .libs/oper.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o getset.lo getset.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c getset.c -fno-common -DPIC -o .libs/getset.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o view.lo view.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c view.c -fno-common -DPIC -o .libs/view.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o submatrix.lo submatrix.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c submatrix.c -fno-common -DPIC -o .libs/submatrix.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslmatrix.la init.lo matrix.lo file.lo rowcol.lo swap.lo copy.lo minmax.lo prop.lo oper.lo getset.lo view.lo submatrix.lo -lm libtool: link: ar cru .libs/libgslmatrix.a .libs/init.o .libs/matrix.o .libs/file.o .libs/rowcol.o .libs/swap.o .libs/copy.o .libs/minmax.o .libs/prop.o .libs/oper.o .libs/getset.o .libs/view.o .libs/submatrix.o libtool: link: ranlib .libs/libgslmatrix.a libtool: link: ( cd ".libs" && rm -f "libgslmatrix.la" && ln -s "../libgslmatrix.la" "libgslmatrix.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_matrix.h gsl_matrix_char.h gsl_matrix_complex_double.h gsl_matrix_complex_float.h gsl_matrix_complex_long_double.h gsl_matrix_double.h gsl_matrix_float.h gsl_matrix_int.h gsl_matrix_long.h gsl_matrix_long_double.h gsl_matrix_short.h gsl_matrix_uchar.h gsl_matrix_uint.h gsl_matrix_ulong.h gsl_matrix_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in vector /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c -fno-common -DPIC -o .libs/init.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c -fno-common -DPIC -o .libs/file.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o vector.lo vector.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c vector.c -fno-common -DPIC -o .libs/vector.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o copy.lo copy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c copy.c -fno-common -DPIC -o .libs/copy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o swap.lo swap.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c swap.c -fno-common -DPIC -o .libs/swap.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o prop.lo prop.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prop.c -fno-common -DPIC -o .libs/prop.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c -fno-common -DPIC -o .libs/minmax.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o oper.lo oper.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c oper.c -fno-common -DPIC -o .libs/oper.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o reim.lo reim.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c reim.c -fno-common -DPIC -o .libs/reim.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o subvector.lo subvector.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c subvector.c -fno-common -DPIC -o .libs/subvector.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o view.lo view.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c view.c -fno-common -DPIC -o .libs/view.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslvector.la init.lo file.lo vector.lo copy.lo swap.lo prop.lo minmax.lo oper.lo reim.lo subvector.lo view.lo -lm libtool: link: ar cru .libs/libgslvector.a .libs/init.o .libs/file.o .libs/vector.o .libs/copy.o .libs/swap.o .libs/prop.o .libs/minmax.o .libs/oper.o .libs/reim.o .libs/subvector.o .libs/view.o libtool: link: ranlib .libs/libgslvector.a libtool: link: ( cd ".libs" && rm -f "libgslvector.la" && ln -s "../libgslvector.la" "libgslvector.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_vector.h gsl_vector_char.h gsl_vector_complex.h gsl_vector_complex_double.h gsl_vector_complex_float.h gsl_vector_complex_long_double.h gsl_vector_double.h gsl_vector_float.h gsl_vector_int.h gsl_vector_long.h gsl_vector_long_double.h gsl_vector_short.h gsl_vector_uchar.h gsl_vector_uint.h gsl_vector_ulong.h gsl_vector_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in rng /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o borosh13.lo borosh13.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c borosh13.c -fno-common -DPIC -o .libs/borosh13.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o cmrg.lo cmrg.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cmrg.c -fno-common -DPIC -o .libs/cmrg.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o coveyou.lo coveyou.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coveyou.c -fno-common -DPIC -o .libs/coveyou.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o default.lo default.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c default.c -fno-common -DPIC -o .libs/default.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c -fno-common -DPIC -o .libs/file.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fishman18.lo fishman18.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman18.c -fno-common -DPIC -o .libs/fishman18.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fishman20.lo fishman20.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman20.c -fno-common -DPIC -o .libs/fishman20.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fishman2x.lo fishman2x.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fishman2x.c -fno-common -DPIC -o .libs/fishman2x.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gfsr4.lo gfsr4.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gfsr4.c -fno-common -DPIC -o .libs/gfsr4.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o knuthran2.lo knuthran2.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran2.c -fno-common -DPIC -o .libs/knuthran2.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o knuthran.lo knuthran.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran.c -fno-common -DPIC -o .libs/knuthran.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o knuthran2002.lo knuthran2002.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c knuthran2002.c -fno-common -DPIC -o .libs/knuthran2002.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lecuyer21.lo lecuyer21.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lecuyer21.c -fno-common -DPIC -o .libs/lecuyer21.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o minstd.lo minstd.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minstd.c -fno-common -DPIC -o .libs/minstd.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mrg.lo mrg.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mrg.c -fno-common -DPIC -o .libs/mrg.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mt.lo mt.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mt.c -fno-common -DPIC -o .libs/mt.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o r250.lo r250.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c r250.c -fno-common -DPIC -o .libs/r250.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ran0.lo ran0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran0.c -fno-common -DPIC -o .libs/ran0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ran1.lo ran1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran1.c -fno-common -DPIC -o .libs/ran1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ran2.lo ran2.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran2.c -fno-common -DPIC -o .libs/ran2.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ran3.lo ran3.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ran3.c -fno-common -DPIC -o .libs/ran3.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rand48.lo rand48.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rand48.c -fno-common -DPIC -o .libs/rand48.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rand.lo rand.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rand.c -fno-common -DPIC -o .libs/rand.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o random.lo random.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 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-falign-functions=64 -Wall -g -O2 -c -o tt.lo tt.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tt.c -fno-common -DPIC -o .libs/tt.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o types.lo types.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c types.c -fno-common -DPIC -o .libs/types.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o uni32.lo uni32.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c uni32.c -fno-common -DPIC -o .libs/uni32.o uni32.c:108:32: warning: unused variable 'MDIG' [-Wunused-const-variable] static const unsigned long int MDIG = 32; /* Machine digits in int */ ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o uni.lo uni.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c uni.c -fno-common -DPIC -o .libs/uni.o uni.c:108:27: warning: unused variable 'MDIG' [-Wunused-const-variable] static const unsigned int MDIG = 16; /* Machine digits in int */ ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o vax.lo vax.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c vax.c -fno-common -DPIC -o .libs/vax.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o waterman14.lo waterman14.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c waterman14.c -fno-common -DPIC -o .libs/waterman14.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o zuf.lo zuf.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zuf.c -fno-common -DPIC -o .libs/zuf.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c -fno-common -DPIC -o .libs/inline.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslrng.la borosh13.lo cmrg.lo coveyou.lo default.lo file.lo fishman18.lo fishman20.lo fishman2x.lo gfsr4.lo knuthran2.lo knuthran.lo knuthran2002.lo lecuyer21.lo minstd.lo mrg.lo mt.lo r250.lo ran0.lo ran1.lo ran2.lo ran3.lo rand48.lo rand.lo random.lo randu.lo ranf.lo ranlux.lo ranlxd.lo ranlxs.lo ranmar.lo rng.lo slatec.lo taus.lo taus113.lo transputer.lo tt.lo types.lo uni32.lo uni.lo vax.lo waterman14.lo zuf.lo inline.lo -lm libtool: link: ar cru .libs/libgslrng.a .libs/borosh13.o .libs/cmrg.o .libs/coveyou.o .libs/default.o .libs/file.o .libs/fishman18.o .libs/fishman20.o .libs/fishman2x.o .libs/gfsr4.o .libs/knuthran2.o .libs/knuthran.o .libs/knuthran2002.o .libs/lecuyer21.o .libs/minstd.o .libs/mrg.o .libs/mt.o .libs/r250.o .libs/ran0.o .libs/ran1.o .libs/ran2.o .libs/ran3.o .libs/rand48.o .libs/rand.o .libs/random.o .libs/randu.o .libs/ranf.o .libs/ranlux.o .libs/ranlxd.o .libs/ranlxs.o .libs/ranmar.o .libs/rng.o .libs/slatec.o .libs/taus.o .libs/taus113.o .libs/transputer.o .libs/tt.o .libs/types.o .libs/uni32.o .libs/uni.o .libs/vax.o .libs/waterman14.o .libs/zuf.o .libs/inline.o libtool: link: ranlib .libs/libgslrng.a libtool: link: ( cd ".libs" && rm -f "libgslrng.la" && ln -s "../libgslrng.la" "libgslrng.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_rng.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in randist /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bernoulli.lo bernoulli.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall 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clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dirichlet.c -fno-common -DPIC -o .libs/dirichlet.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o discrete.lo discrete.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c discrete.c -fno-common -DPIC -o .libs/discrete.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o erlang.lo erlang.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c erlang.c -fno-common -DPIC -o .libs/erlang.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include 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--mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gausszig.lo gausszig.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gausszig.c -fno-common -DPIC -o .libs/gausszig.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gausstail.lo gausstail.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gausstail.c -fno-common -DPIC -o .libs/gausstail.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o geometric.lo geometric.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c 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libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logistic.c -fno-common -DPIC -o .libs/logistic.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lognormal.lo lognormal.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormal.c -fno-common -DPIC -o .libs/lognormal.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o multinomial.lo multinomial.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c multinomial.c -fno-common -DPIC -o .libs/multinomial.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o nbinomial.lo nbinomial.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nbinomial.c -fno-common -DPIC -o .libs/nbinomial.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pareto.lo pareto.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pareto.c -fno-common -DPIC -o .libs/pareto.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pascal.lo pascal.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pascal.c -fno-common -DPIC -o .libs/pascal.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o poisson.lo poisson.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poisson.c -fno-common -DPIC -o .libs/poisson.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rayleigh.lo rayleigh.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleigh.c -fno-common -DPIC -o .libs/rayleigh.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o shuffle.lo shuffle.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c shuffle.c -fno-common -DPIC -o .libs/shuffle.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o sphere.lo sphere.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sphere.c -fno-common -DPIC -o .libs/sphere.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o tdist.lo tdist.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdist.c -fno-common -DPIC -o .libs/tdist.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o weibull.lo weibull.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibull.c -fno-common -DPIC -o .libs/weibull.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o landau.lo landau.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c landau.c -fno-common -DPIC -o .libs/landau.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o binomial_tpe.lo binomial_tpe.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c binomial_tpe.c -fno-common -DPIC -o .libs/binomial_tpe.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslrandist.la bernoulli.lo beta.lo bigauss.lo binomial.lo cauchy.lo chisq.lo dirichlet.lo discrete.lo erlang.lo exponential.lo exppow.lo fdist.lo flat.lo gamma.lo gauss.lo gausszig.lo gausstail.lo geometric.lo gumbel.lo hyperg.lo laplace.lo levy.lo logarithmic.lo logistic.lo lognormal.lo multinomial.lo nbinomial.lo pareto.lo pascal.lo poisson.lo rayleigh.lo shuffle.lo sphere.lo tdist.lo weibull.lo landau.lo binomial_tpe.lo -lm libtool: link: ar cru .libs/libgslrandist.a .libs/bernoulli.o .libs/beta.o .libs/bigauss.o .libs/binomial.o .libs/cauchy.o .libs/chisq.o .libs/dirichlet.o .libs/discrete.o .libs/erlang.o .libs/exponential.o .libs/exppow.o .libs/fdist.o .libs/flat.o .libs/gamma.o .libs/gauss.o .libs/gausszig.o .libs/gausstail.o .libs/geometric.o .libs/gumbel.o .libs/hyperg.o .libs/laplace.o .libs/levy.o .libs/logarithmic.o .libs/logistic.o .libs/lognormal.o .libs/multinomial.o .libs/nbinomial.o .libs/pareto.o .libs/pascal.o .libs/poisson.o .libs/rayleigh.o .libs/shuffle.o .libs/sphere.o .libs/tdist.o .libs/weibull.o .libs/landau.o .libs/binomial_tpe.o libtool: link: ranlib .libs/libgslrandist.a libtool: link: ( cd ".libs" && rm -f "libgslrandist.la" && ln -s "../libgslrandist.la" "libgslrandist.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_randist.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in cdf /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o beta.lo beta.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta.c -fno-common -DPIC -o .libs/beta.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o betainv.lo betainv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c betainv.c -fno-common -DPIC -o .libs/betainv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o cauchy.lo cauchy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cauchy.c -fno-common -DPIC -o .libs/cauchy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o cauchyinv.lo cauchyinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cauchyinv.c -fno-common -DPIC -o .libs/cauchyinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o chisq.lo chisq.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chisq.c -fno-common -DPIC -o .libs/chisq.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o chisqinv.lo chisqinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c chisqinv.c -fno-common -DPIC -o .libs/chisqinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o exponential.lo exponential.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponential.c -fno-common -DPIC -o .libs/exponential.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o exponentialinv.lo exponentialinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponentialinv.c -fno-common -DPIC -o .libs/exponentialinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o exppow.lo exppow.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exppow.c -fno-common -DPIC -o .libs/exppow.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fdist.lo fdist.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdist.c -fno-common -DPIC -o .libs/fdist.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fdistinv.lo fdistinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdistinv.c -fno-common -DPIC -o .libs/fdistinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o flat.lo flat.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c flat.c -fno-common -DPIC -o .libs/flat.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o flatinv.lo flatinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c flatinv.c -fno-common -DPIC -o .libs/flatinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gamma.lo gamma.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma.c -fno-common -DPIC -o .libs/gamma.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gammainv.lo gammainv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gammainv.c -fno-common -DPIC -o .libs/gammainv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gauss.lo gauss.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gauss.c -fno-common -DPIC -o .libs/gauss.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gaussinv.lo gaussinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gaussinv.c -fno-common -DPIC -o .libs/gaussinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gumbel1.lo gumbel1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gumbel1.c -fno-common -DPIC -o .libs/gumbel1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. 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-Wall -g -O2 -c logistic.c -fno-common -DPIC -o .libs/logistic.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o logisticinv.lo logisticinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c logisticinv.c -fno-common -DPIC -o .libs/logisticinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lognormal.lo lognormal.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormal.c -fno-common -DPIC -o .libs/lognormal.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lognormalinv.lo lognormalinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lognormalinv.c -fno-common -DPIC -o .libs/lognormalinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pareto.lo pareto.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pareto.c -fno-common -DPIC -o .libs/pareto.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o paretoinv.lo paretoinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c paretoinv.c -fno-common -DPIC -o .libs/paretoinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rayleigh.lo rayleigh.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleigh.c -fno-common -DPIC -o .libs/rayleigh.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o rayleighinv.lo rayleighinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c rayleighinv.c -fno-common -DPIC -o .libs/rayleighinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o tdist.lo tdist.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdist.c -fno-common -DPIC -o .libs/tdist.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o tdistinv.lo tdistinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tdistinv.c -fno-common -DPIC -o .libs/tdistinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o weibull.lo weibull.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibull.c -fno-common -DPIC -o .libs/weibull.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o weibullinv.lo weibullinv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c weibullinv.c -fno-common -DPIC -o .libs/weibullinv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o binomial.lo binomial.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c binomial.c -fno-common -DPIC -o .libs/binomial.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o poisson.lo poisson.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poisson.c -fno-common -DPIC -o .libs/poisson.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o geometric.lo geometric.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c geometric.c -fno-common -DPIC -o .libs/geometric.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o nbinomial.lo nbinomial.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nbinomial.c -fno-common -DPIC -o .libs/nbinomial.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pascal.lo pascal.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pascal.c -fno-common -DPIC -o .libs/pascal.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hypergeometric.lo hypergeometric.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hypergeometric.c -fno-common -DPIC -o .libs/hypergeometric.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslcdf.la beta.lo betainv.lo cauchy.lo cauchyinv.lo chisq.lo chisqinv.lo exponential.lo exponentialinv.lo exppow.lo fdist.lo fdistinv.lo flat.lo flatinv.lo gamma.lo gammainv.lo gauss.lo gaussinv.lo gumbel1.lo gumbel1inv.lo gumbel2.lo gumbel2inv.lo laplace.lo laplaceinv.lo logistic.lo logisticinv.lo lognormal.lo lognormalinv.lo pareto.lo paretoinv.lo rayleigh.lo rayleighinv.lo tdist.lo tdistinv.lo weibull.lo weibullinv.lo binomial.lo poisson.lo geometric.lo nbinomial.lo pascal.lo hypergeometric.lo -lm libtool: link: ar cru .libs/libgslcdf.a .libs/beta.o .libs/betainv.o .libs/cauchy.o .libs/cauchyinv.o .libs/chisq.o .libs/chisqinv.o .libs/exponential.o .libs/exponentialinv.o .libs/exppow.o .libs/fdist.o .libs/fdistinv.o .libs/flat.o .libs/flatinv.o .libs/gamma.o .libs/gammainv.o .libs/gauss.o .libs/gaussinv.o .libs/gumbel1.o .libs/gumbel1inv.o .libs/gumbel2.o .libs/gumbel2inv.o .libs/laplace.o .libs/laplaceinv.o .libs/logistic.o .libs/logisticinv.o .libs/lognormal.o .libs/lognormalinv.o .libs/pareto.o .libs/paretoinv.o .libs/rayleigh.o .libs/rayleighinv.o .libs/tdist.o .libs/tdistinv.o .libs/weibull.o .libs/weibullinv.o .libs/binomial.o .libs/poisson.o .libs/geometric.o .libs/nbinomial.o .libs/pascal.o .libs/hypergeometric.o libtool: link: ranlib .libs/libgslcdf.a libtool: link: ( cd ".libs" && rm -f "libgslcdf.la" && ln -s "../libgslcdf.la" "libgslcdf.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_cdf.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in cblas /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o sasum.lo sasum.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sasum.c -fno-common -DPIC -o .libs/sasum.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o saxpy.lo saxpy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c saxpy.c -fno-common -DPIC -o .libs/saxpy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o scasum.lo scasum.c libtool: compile: clang -arch x86_64 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clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o caxpy.lo caxpy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c caxpy.c -fno-common -DPIC -o .libs/caxpy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ccopy.lo ccopy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ccopy.c -fno-common -DPIC -o .libs/ccopy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o cdotc_sub.lo cdotc_sub.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cdotc_sub.c -fno-common -DPIC -o 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.libs/dspr2.o .libs/dswap.o .libs/dsymm.o .libs/dsymv.o .libs/dsyr.o .libs/dsyr2.o .libs/dsyr2k.o .libs/dsyrk.o .libs/dtbmv.o .libs/dtbsv.o .libs/dtpmv.o .libs/dtpsv.o .libs/dtrmm.o .libs/dtrmv.o .libs/dtrsm.o .libs/dtrsv.o .libs/dzasum.o .libs/dznrm2.o .libs/caxpy.o .libs/ccopy.o .libs/cdotc_sub.o .libs/cdotu_sub.o .libs/cgbmv.o .libs/cgemm.o .libs/cgemv.o .libs/cgerc.o .libs/cgeru.o .libs/chbmv.o .libs/chemm.o .libs/chemv.o .libs/cher.o .libs/cher2.o .libs/cher2k.o .libs/cherk.o .libs/chpmv.o .libs/chpr.o .libs/chpr2.o .libs/cscal.o .libs/csscal.o .libs/cswap.o .libs/csymm.o .libs/csyr2k.o .libs/csyrk.o .libs/ctbmv.o .libs/ctbsv.o .libs/ctpmv.o .libs/ctpsv.o .libs/ctrmm.o .libs/ctrmv.o .libs/ctrsm.o .libs/ctrsv.o .libs/zaxpy.o .libs/zcopy.o .libs/zdotc_sub.o .libs/zdotu_sub.o .libs/zdscal.o .libs/zgbmv.o .libs/zgemm.o .libs/zgemv.o .libs/zgerc.o .libs/zgeru.o .libs/zhbmv.o .libs/zhemm.o .libs/zhemv.o .libs/zher.o .libs/zher2.o .libs/zher2k.o .libs/zherk.o .libs/zhpmv.o .libs/zhpr.o 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'/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib' libtool: install: /usr/bin/install -c .libs/libgslcblas.0.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.0.dylib libtool: install: (cd /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgslcblas.0.dylib libgslcblas.dylib || { rm -f libgslcblas.dylib && ln -s libgslcblas.0.dylib libgslcblas.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libgslcblas.lai /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgslcblas.la ---------------------------------------------------------------------- Libraries have been installed in: /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_cblas.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in specfunc /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o airy.lo airy.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy.c -fno-common -DPIC -o .libs/airy.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o airy_der.lo airy_der.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy_der.c -fno-common -DPIC -o .libs/airy_der.o airy_der.c:595:10: warning: variable 'x32' set but not used [-Wunused-but-set-variable] double x32; ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o airy_zero.lo airy_zero.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c airy_zero.c -fno-common -DPIC -o .libs/airy_zero.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o atanint.lo atanint.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c atanint.c -fno-common -DPIC -o .libs/atanint.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel.lo bessel.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel.c -fno-common -DPIC -o .libs/bessel.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_I0.lo bessel_I0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_I0.c -fno-common -DPIC -o .libs/bessel_I0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_I1.lo bessel_I1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_I1.c -fno-common -DPIC -o .libs/bessel_I1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_In.lo bessel_In.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_In.c -fno-common -DPIC -o .libs/bessel_In.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Inu.lo bessel_Inu.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Inu.c -fno-common -DPIC -o .libs/bessel_Inu.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_J0.lo bessel_J0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_J0.c -fno-common -DPIC -o .libs/bessel_J0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_J1.lo bessel_J1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_J1.c -fno-common -DPIC -o .libs/bessel_J1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Jn.lo bessel_Jn.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Jn.c -fno-common -DPIC -o .libs/bessel_Jn.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Jnu.lo bessel_Jnu.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Jnu.c -fno-common -DPIC -o .libs/bessel_Jnu.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_K0.lo bessel_K0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_K0.c -fno-common -DPIC -o .libs/bessel_K0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_K1.lo bessel_K1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_K1.c -fno-common -DPIC -o .libs/bessel_K1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Kn.lo bessel_Kn.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Kn.c -fno-common -DPIC -o .libs/bessel_Kn.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Knu.lo bessel_Knu.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Knu.c -fno-common -DPIC -o .libs/bessel_Knu.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Y0.lo bessel_Y0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Y0.c -fno-common -DPIC -o .libs/bessel_Y0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Y1.lo bessel_Y1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Y1.c -fno-common -DPIC -o .libs/bessel_Y1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Yn.lo bessel_Yn.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Yn.c -fno-common -DPIC -o .libs/bessel_Yn.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_Ynu.lo bessel_Ynu.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_Ynu.c -fno-common -DPIC -o .libs/bessel_Ynu.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_amp_phase.lo bessel_amp_phase.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_amp_phase.c -fno-common -DPIC -o .libs/bessel_amp_phase.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_i.lo bessel_i.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_i.c -fno-common -DPIC -o .libs/bessel_i.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_j.lo bessel_j.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_j.c -fno-common -DPIC -o .libs/bessel_j.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_k.lo bessel_k.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_k.c -fno-common -DPIC -o .libs/bessel_k.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_olver.lo bessel_olver.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_olver.c -fno-common -DPIC -o .libs/bessel_olver.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_temme.lo bessel_temme.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_temme.c -fno-common -DPIC -o .libs/bessel_temme.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_y.lo bessel_y.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_y.c -fno-common -DPIC -o .libs/bessel_y.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_zero.lo bessel_zero.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_zero.c -fno-common -DPIC -o .libs/bessel_zero.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bessel_sequence.lo bessel_sequence.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bessel_sequence.c -fno-common -DPIC -o .libs/bessel_sequence.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o beta.lo beta.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta.c -fno-common -DPIC -o .libs/beta.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o beta_inc.lo beta_inc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c beta_inc.c -fno-common -DPIC -o .libs/beta_inc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o clausen.lo clausen.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c clausen.c -fno-common -DPIC -o .libs/clausen.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o coulomb.lo coulomb.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coulomb.c -fno-common -DPIC -o .libs/coulomb.o coulomb.c:1061:9: warning: variable 'stat_CF1_lam_G' set but not used [-Wunused-but-set-variable] int stat_CF1_lam_G; ^ coulomb.c:1131:23: warning: variable 'Fp_lam_min' set but not used [-Wunused-but-set-variable] double F_lam_min, Fp_lam_min; ^ coulomb.c:994:17: warning: variable 'G_lam_G' is uninitialized when used here [-Wuninitialized] G->val = G_lam_G; ^~~~~~~ coulomb.c:945:19: note: initialize the variable 'G_lam_G' to silence this warning double G_lam_G, Gp_lam_G; ^ = 0.0 coulomb.c:996:17: warning: variable 'Gp_lam_G' is uninitialized when used here [-Wuninitialized] Gp->val = Gp_lam_G; ^~~~~~~~ coulomb.c:945:29: note: initialize the variable 'Gp_lam_G' to silence this warning double G_lam_G, Gp_lam_G; ^ = 0.0 4 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o coupling.lo coupling.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coupling.c -fno-common -DPIC -o .libs/coupling.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o coulomb_bound.lo coulomb_bound.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coulomb_bound.c -fno-common -DPIC -o .libs/coulomb_bound.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o dawson.lo dawson.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dawson.c -fno-common -DPIC -o .libs/dawson.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o debye.lo debye.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c debye.c -fno-common -DPIC -o .libs/debye.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o dilog.lo dilog.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c dilog.c -fno-common -DPIC -o .libs/dilog.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o elementary.lo elementary.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c elementary.c -fno-common -DPIC -o .libs/elementary.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ellint.lo ellint.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ellint.c -fno-common -DPIC -o .libs/ellint.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o elljac.lo elljac.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c elljac.c -fno-common -DPIC -o .libs/elljac.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o erfc.lo erfc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c erfc.c -fno-common -DPIC -o .libs/erfc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o exp.lo exp.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exp.c -fno-common -DPIC -o .libs/exp.o exp.c:216:83: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] const double arg_err = 2.0 * GSL_DBL_EPSILON * (fabs(x) + fabs(ly) + M_LN10*fabs(N)); ^ exp.c:216:83: note: use function 'abs' instead const double arg_err = 2.0 * GSL_DBL_EPSILON * (fabs(x) + fabs(ly) + M_LN10*fabs(N)); ^~~~ abs exp.c:216:83: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs' 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o expint.lo expint.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expint.c -fno-common -DPIC -o .libs/expint.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o expint3.lo expint3.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expint3.c -fno-common -DPIC -o .libs/expint3.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fermi_dirac.lo fermi_dirac.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fermi_dirac.c -fno-common -DPIC -o .libs/fermi_dirac.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gegenbauer.lo gegenbauer.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gegenbauer.c -fno-common -DPIC -o .libs/gegenbauer.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gamma.lo gamma.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma.c -fno-common -DPIC -o .libs/gamma.o gamma.c:1614:54: warning: taking the absolute value of unsigned type 'unsigned int' has no effect [-Wabsolute-value] result->err = 2.0 * GSL_DBL_EPSILON * prod * fabs(n-m); ^ gamma.c:1614:54: note: remove the call to 'fabs' since unsigned values cannot be negative result->err = 2.0 * GSL_DBL_EPSILON * prod * fabs(n-m); ^~~~ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gamma_inc.lo gamma_inc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gamma_inc.c -fno-common -DPIC -o .libs/gamma_inc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg_0F1.lo hyperg_0F1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_0F1.c -fno-common -DPIC -o .libs/hyperg_0F1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg_2F0.lo hyperg_2F0.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_2F0.c -fno-common -DPIC -o .libs/hyperg_2F0.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg_1F1.lo hyperg_1F1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_1F1.c -fno-common -DPIC -o .libs/hyperg_1F1.o hyperg_1F1.c:1003:44: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err = 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ma/Mn); ^ hyperg_1F1.c:1003:44: note: use function 'abs' instead result->err = 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ma/Mn); ^~~~ abs hyperg_1F1.c:1034:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err += 4.0 * GSL_DBL_EPSILON * (fabs(b-a)+1.0) * fabs(result->val); ^ hyperg_1F1.c:1034:45: note: use function 'abs' instead result->err += 4.0 * GSL_DBL_EPSILON * (fabs(b-a)+1.0) * fabs(result->val); ^~~~ abs hyperg_1F1.c:1057:24: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err *= fabs(a-b)+1.0; ^ hyperg_1F1.c:1057:24: note: use function 'abs' instead result->err *= fabs(a-b)+1.0; ^~~~ abs hyperg_1F1.c:1086:40: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err = fabs(Mn) * (1.0 + fabs(a)) * fabs(r_Mn.err / r_Mn.val); ^ hyperg_1F1.c:1086:40: note: use function 'abs' instead result->err = fabs(Mn) * (1.0 + fabs(a)) * fabs(r_Mn.err / r_Mn.val); ^~~~ abs hyperg_1F1.c:1113:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err *= fabs(b-a)+1.0; ^ hyperg_1F1.c:1113:22: note: use function 'abs' instead result->err *= fabs(b-a)+1.0; ^~~~ abs hyperg_1F1.c:1169:22: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err *= fabs(b-a)+1.0; ^ hyperg_1F1.c:1169:22: note: use function 'abs' instead result->err *= fabs(b-a)+1.0; ^~~~ abs hyperg_1F1.c:1813:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(x > 100.0 && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) { ^ hyperg_1F1.c:1813:41: note: use function 'abs' instead else if(x > 100.0 && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) { ^~~~ abs hyperg_1F1.c:1813:68: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(x > 100.0 && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) { ^ hyperg_1F1.c:1813:68: note: use function 'abs' instead else if(x > 100.0 && GSL_MAX_DBL(1.0,fabs(b-a))*GSL_MAX_DBL(1.0,fabs(1-a)) < 0.5 * x) { ^~~~ abs hyperg_1F1.c:1817:41: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) { ^ hyperg_1F1.c:1817:41: note: use function 'abs' instead else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) { ^~~~ abs hyperg_1F1.c:1817:66: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) { ^ hyperg_1F1.c:1817:66: note: use function 'abs' instead else if(x < -100.0 && GSL_MAX_DBL(1.0,fabs(a))*GSL_MAX_DBL(1.0,fabs(1+a-b)) < 0.5 * fabs(x)) { ^~~~ abs 10 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg_2F1.lo hyperg_2F1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_2F1.c -fno-common -DPIC -o .libs/hyperg_2F1.o hyperg_2F1.c:373:9: warning: variable 'stat_c' set but not used [-Wunused-but-set-variable] int stat_c; ^ hyperg_2F1.c:523:9: warning: variable 'status_F1' set but not used [-Wunused-but-set-variable] int status_F1, status_F2; ^ hyperg_2F1.c:523:20: warning: variable 'status_F2' set but not used [-Wunused-but-set-variable] int status_F1, status_F2; ^ hyperg_2F1.c:721:12: warning: variable 'ap' set but not used [-Wunused-but-set-variable] double ap, bp; ^ 4 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg_U.lo hyperg_U.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg_U.c -fno-common -DPIC -o .libs/hyperg_U.o hyperg_U.c:285:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err += fabs(poch.val) * (fabs(N) + 2.0) * GSL_DBL_EPSILON * fabs(sum_val); ^ hyperg_U.c:285:38: note: use function 'abs' instead result->err += fabs(poch.val) * (fabs(N) + 2.0) * GSL_DBL_EPSILON * fabs(sum_val); ^~~~ abs hyperg_U.c:301:11: warning: variable 'stat_gamr' set but not used [-Wunused-but-set-variable] int stat_gamr; ^ hyperg_U.c:527:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] if(!finite(t_val) || fabs(t_val) < EPS*fabs(dchu_val)) break; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here extern int finite(double) ^ hyperg_U.c:861:45: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err = 2.0 * GSL_DBL_EPSILON * (fabs(b) + fabs(x)); ^ hyperg_U.c:861:45: note: use function 'abs' instead result->err = 2.0 * GSL_DBL_EPSILON * (fabs(b) + fabs(x)); ^~~~ abs hyperg_U.c:871:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(ASYMP_EVAL_OK(a,b,x)) { ^ hyperg_U.c:40:43: note: expanded from macro 'ASYMP_EVAL_OK' #define ASYMP_EVAL_OK(a,b,x) (GSL_MAX_DBL(fabs(a),1.0)*GSL_MAX_DBL(fabs(1.0+a-b),1.0) < 0.99*fabs(x)) ^ hyperg_U.c:871:11: note: use function 'abs' instead hyperg_U.c:40:43: note: expanded from macro 'ASYMP_EVAL_OK' #define ASYMP_EVAL_OK(a,b,x) (GSL_MAX_DBL(fabs(a),1.0)*GSL_MAX_DBL(fabs(1.0+a-b),1.0) < 0.99*fabs(x)) ^ hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(SERIES_EVAL_OK(a,b,x) && 1 + a - b > 0) { ^ hyperg_U.c:38:33: note: expanded from macro 'SERIES_EVAL_OK' #define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) < 10 && b < 10 && x < 1.0)) ^ hyperg_U.c:881:11: note: use function 'abs' instead hyperg_U.c:38:33: note: expanded from macro 'SERIES_EVAL_OK' #define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) < 10 && b < 10 && x < 1.0)) ^ hyperg_U.c:881:11: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] else if(SERIES_EVAL_OK(a,b,x) && 1 + a - b > 0) { ^ hyperg_U.c:38:70: note: expanded from macro 'SERIES_EVAL_OK' #define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) < 10 && b < 10 && x < 1.0)) ^ hyperg_U.c:881:11: note: use function 'abs' instead hyperg_U.c:38:70: note: expanded from macro 'SERIES_EVAL_OK' #define SERIES_EVAL_OK(a,b,x) ((fabs(a) < 5 && b < 5 && x < 2.0) || (fabs(a) < 10 && b < 10 && x < 1.0)) ^ hyperg_U.c:913:38: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] y.err = 4.0 * GSL_DBL_EPSILON * (fabs(a)+1.0) * fabs(Ua); ^ hyperg_U.c:913:38: note: use function 'abs' instead y.err = 4.0 * GSL_DBL_EPSILON * (fabs(a)+1.0) * fabs(Ua); ^~~~ abs hyperg_U.c:947:39: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] y.err += 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ua); ^ hyperg_U.c:947:39: note: use function 'abs' instead y.err += 2.0 * GSL_DBL_EPSILON * (fabs(a) + 1.0) * fabs(Ua); ^~~~ abs hyperg_U.c:998:35: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] double oUa_err = 2.0 * (fabs(a_target-a) + CF1_count + 1.0) * GSL_DBL_EPSILON * fabs(1.0/Ua); ^ hyperg_U.c:998:35: note: use function 'abs' instead double oUa_err = 2.0 * (fabs(a_target-a) + CF1_count + 1.0) * GSL_DBL_EPSILON * fabs(1.0/Ua); ^~~~ abs hyperg_U.c:1042:48: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] Ua1_bck_err = 2.0 * GSL_DBL_EPSILON * (fabs(a1-a)+CF1_count+1.0) * fabs(Ua); ^ hyperg_U.c:1042:48: note: use function 'abs' instead Ua1_bck_err = 2.0 * GSL_DBL_EPSILON * (fabs(a1-a)+CF1_count+1.0) * fabs(Ua); ^~~~ abs hyperg_U.c:1108:49: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] Ua1_for_err += 2.0 * GSL_DBL_EPSILON * (fabs(a1-a0)+1.0) * fabs(Ua1_for_val); ^ hyperg_U.c:1108:49: note: use function 'abs' instead Ua1_for_err += 2.0 * GSL_DBL_EPSILON * (fabs(a1-a0)+1.0) * fabs(Ua1_for_val); ^~~~ abs hyperg_U.c:1439:57: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] lnm.err = 2.0 * GSL_DBL_EPSILON * (fabs(lm_for) + fabs(scale_count_for - scale_count_bck)*fabs(lnscale)); ^ hyperg_U.c:1439:57: note: use function 'abs' instead lnm.err = 2.0 * GSL_DBL_EPSILON * (fabs(lm_for) + fabs(scale_count_for - scale_count_bck)*fabs(lnscale)); ^~~~ abs hyperg_U.c:1512:52: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] double ln_pre_err = 2.0 * GSL_DBL_EPSILON * (fabs(b)+1.0) * fabs(ln_x); ^ hyperg_U.c:1512:52: note: use function 'abs' instead double ln_pre_err = 2.0 * GSL_DBL_EPSILON * (fabs(b)+1.0) * fabs(ln_x); ^~~~ abs 14 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hyperg.lo hyperg.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hyperg.c -fno-common -DPIC -o .libs/hyperg.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o laguerre.lo laguerre.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c laguerre.c -fno-common -DPIC -o .libs/laguerre.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lambert.lo lambert.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lambert.c -fno-common -DPIC -o .libs/lambert.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o legendre_H3d.lo legendre_H3d.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_H3d.c -fno-common -DPIC -o .libs/legendre_H3d.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o legendre_Qn.lo legendre_Qn.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_Qn.c -fno-common -DPIC -o .libs/legendre_Qn.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o legendre_con.lo legendre_con.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_con.c -fno-common -DPIC -o .libs/legendre_con.o legendre_con.c:875:17: warning: variable 'stat_E' set but not used [-Wunused-but-set-variable] int stat_K, stat_E; ^ legendre_con.c:173:21: warning: unused variable 'U3c1' [-Wunused-const-variable] static const double U3c1[] = { -1307.0, -1647.0, 3375.0, 3675.0 }; ^ legendre_con.c:174:21: warning: unused variable 'U3c2' [-Wunused-const-variable] static const double U3c2[] = { 29366.0, 35835.0, -252360.0, -272630.0, ^ legendre_con.c:176:21: warning: unused variable 'U3c3' [-Wunused-const-variable] static const double U3c3[] = { -29748.0, -8840.0, 1725295.0, 1767025.0, ^ legendre_con.c:178:21: warning: unused variable 'U3c4' [-Wunused-const-variable] static const double U3c4[] = { 2696.0, -16740.0, -524250.0, -183975.0, ^ legendre_con.c:181:21: warning: unused variable 'U3c5' [-Wunused-const-variable] static const double U3c5[] = { 9136.0, 22480.0, 12760.0, ^ 6 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o legendre_poly.lo legendre_poly.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c legendre_poly.c -fno-common -DPIC -o .libs/legendre_poly.o legendre_poly.c:544:67: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] lnpre_err = 0.25*M_LNPI*GSL_DBL_EPSILON + 0.5 * (lnpoch.err + fabs(m)*lncirc.err); ^ legendre_poly.c:544:67: note: use function 'abs' instead lnpre_err = 0.25*M_LNPI*GSL_DBL_EPSILON + 0.5 * (lnpoch.err + fabs(m)*lncirc.err); ^~~~ abs legendre_poly.c:582:93: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] y_ell_err = 0.5*(fabs(x*factor1)*y_mmp1_err + fabs((ell+m-1.0)*factor2)*y_mm_err) / fabs(ell-m); ^ legendre_poly.c:582:93: note: use function 'abs' instead y_ell_err = 0.5*(fabs(x*factor1)*y_mmp1_err + fabs((ell+m-1.0)*factor2)*y_mm_err) / fabs(ell-m); ^~~~ abs 2 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o log.lo log.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c log.c -fno-common -DPIC -o .libs/log.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mathieu_angfunc.lo mathieu_angfunc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_angfunc.c -fno-common -DPIC -o .libs/mathieu_angfunc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mathieu_charv.lo mathieu_charv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_charv.c -fno-common -DPIC -o .libs/mathieu_charv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mathieu_coeff.lo mathieu_coeff.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_coeff.c -fno-common -DPIC -o .libs/mathieu_coeff.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mathieu_radfunc.lo mathieu_radfunc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_radfunc.c -fno-common -DPIC -o .libs/mathieu_radfunc.o mathieu_radfunc.c:33:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable] int even_odd, kk, mm, status; ^ mathieu_radfunc.c:139:21: warning: variable 'mm' set but not used [-Wunused-but-set-variable] int even_odd, kk, mm, status; ^ mathieu_radfunc.c:250:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable] int even_odd, order, ii, kk, mm, status; ^ mathieu_radfunc.c:356:32: warning: variable 'mm' set but not used [-Wunused-but-set-variable] int even_odd, order, ii, kk, mm, status; ^ 4 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mathieu_workspace.lo mathieu_workspace.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mathieu_workspace.c -fno-common -DPIC -o .libs/mathieu_workspace.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o poch.lo poch.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c poch.c -fno-common -DPIC -o .libs/poch.o poch.c:164:46: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err = 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val); ^ poch.c:164:46: note: use function 'abs' instead result->err = 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val); ^~~~ abs poch.c:164:46: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs' poch.c:179:47: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value] result->err += 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val); ^ poch.c:179:47: note: use function 'abs' instead result->err += 2.0 * GSL_DBL_EPSILON * (fabs(incr) + 1.0) * fabs(result->val); ^~~~ abs poch.c:179:47: note: include the header <stdlib.h> or explicitly provide a declaration for 'abs' 2 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pow_int.lo pow_int.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pow_int.c -fno-common -DPIC -o .libs/pow_int.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o psi.lo psi.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c psi.c -fno-common -DPIC -o .libs/psi.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o result.lo result.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c result.c -fno-common -DPIC -o .libs/result.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o shint.lo shint.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c shint.c -fno-common -DPIC -o .libs/shint.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o sinint.lo sinint.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sinint.c -fno-common -DPIC -o .libs/sinint.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o synchrotron.lo synchrotron.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c synchrotron.c -fno-common -DPIC -o .libs/synchrotron.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o transport.lo transport.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c transport.c -fno-common -DPIC -o .libs/transport.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o trig.lo trig.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c trig.c -fno-common -DPIC -o .libs/trig.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o zeta.lo zeta.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c zeta.c -fno-common -DPIC -o .libs/zeta.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslspecfunc.la airy.lo airy_der.lo airy_zero.lo atanint.lo bessel.lo bessel_I0.lo bessel_I1.lo bessel_In.lo bessel_Inu.lo bessel_J0.lo bessel_J1.lo bessel_Jn.lo bessel_Jnu.lo bessel_K0.lo bessel_K1.lo bessel_Kn.lo bessel_Knu.lo bessel_Y0.lo bessel_Y1.lo bessel_Yn.lo bessel_Ynu.lo bessel_amp_phase.lo bessel_i.lo bessel_j.lo bessel_k.lo bessel_olver.lo bessel_temme.lo bessel_y.lo bessel_zero.lo bessel_sequence.lo beta.lo beta_inc.lo clausen.lo coulomb.lo coupling.lo coulomb_bound.lo dawson.lo debye.lo dilog.lo elementary.lo ellint.lo elljac.lo erfc.lo exp.lo expint.lo expint3.lo fermi_dirac.lo gegenbauer.lo gamma.lo gamma_inc.lo hyperg_0F1.lo hyperg_2F0.lo hyperg_1F1.lo hyperg_2F1.lo hyperg_U.lo hyperg.lo laguerre.lo lambert.lo legendre_H3d.lo legendre_Qn.lo legendre_con.lo legendre_poly.lo log.lo mathieu_angfunc.lo mathieu_charv.lo mathieu_coeff.lo mathieu_radfunc.lo mathieu_workspace.lo poch.lo pow_int.lo psi.lo result.lo shint.lo sinint.lo synchrotron.lo transport.lo trig.lo zeta.lo -lm libtool: link: ar cru .libs/libgslspecfunc.a .libs/airy.o .libs/airy_der.o .libs/airy_zero.o .libs/atanint.o .libs/bessel.o .libs/bessel_I0.o .libs/bessel_I1.o .libs/bessel_In.o .libs/bessel_Inu.o .libs/bessel_J0.o .libs/bessel_J1.o .libs/bessel_Jn.o .libs/bessel_Jnu.o .libs/bessel_K0.o .libs/bessel_K1.o .libs/bessel_Kn.o .libs/bessel_Knu.o .libs/bessel_Y0.o .libs/bessel_Y1.o .libs/bessel_Yn.o .libs/bessel_Ynu.o .libs/bessel_amp_phase.o .libs/bessel_i.o .libs/bessel_j.o .libs/bessel_k.o .libs/bessel_olver.o .libs/bessel_temme.o .libs/bessel_y.o .libs/bessel_zero.o .libs/bessel_sequence.o .libs/beta.o .libs/beta_inc.o .libs/clausen.o .libs/coulomb.o .libs/coupling.o .libs/coulomb_bound.o .libs/dawson.o .libs/debye.o .libs/dilog.o .libs/elementary.o .libs/ellint.o .libs/elljac.o .libs/erfc.o .libs/exp.o .libs/expint.o .libs/expint3.o .libs/fermi_dirac.o .libs/gegenbauer.o .libs/gamma.o .libs/gamma_inc.o .libs/hyperg_0F1.o .libs/hyperg_2F0.o .libs/hyperg_1F1.o .libs/hyperg_2F1.o .libs/hyperg_U.o .libs/hyperg.o .libs/laguerre.o .libs/lambert.o .libs/legendre_H3d.o .libs/legendre_Qn.o .libs/legendre_con.o .libs/legendre_poly.o .libs/log.o .libs/mathieu_angfunc.o .libs/mathieu_charv.o .libs/mathieu_coeff.o .libs/mathieu_radfunc.o .libs/mathieu_workspace.o .libs/poch.o .libs/pow_int.o .libs/psi.o .libs/result.o .libs/shint.o .libs/sinint.o .libs/synchrotron.o .libs/transport.o .libs/trig.o .libs/zeta.o libtool: link: ranlib .libs/libgslspecfunc.a libtool: link: ( cd ".libs" && rm -f "libgslspecfunc.la" && ln -s "../libgslspecfunc.la" "libgslspecfunc.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_sf.h gsl_sf_airy.h gsl_sf_bessel.h gsl_sf_clausen.h gsl_sf_coulomb.h gsl_sf_coupling.h gsl_sf_dawson.h gsl_sf_debye.h gsl_sf_dilog.h gsl_sf_elementary.h gsl_sf_ellint.h gsl_sf_elljac.h gsl_sf_erf.h gsl_sf_exp.h gsl_sf_expint.h gsl_sf_fermi_dirac.h gsl_sf_gamma.h gsl_sf_gegenbauer.h gsl_sf_hyperg.h gsl_sf_laguerre.h gsl_sf_lambert.h gsl_sf_legendre.h gsl_sf_log.h gsl_sf_mathieu.h gsl_sf_pow_int.h gsl_sf_psi.h gsl_sf_result.h gsl_sf_synchrotron.h gsl_sf_transport.h gsl_sf_trig.h gsl_sf_zeta.h gsl_specfunc.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in linalg /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o multiply.lo multiply.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c multiply.c -fno-common -DPIC -o .libs/multiply.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o exponential.lo exponential.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c exponential.c -fno-common -DPIC -o .libs/exponential.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o tridiag.lo tridiag.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c tridiag.c -fno-common -DPIC -o .libs/tridiag.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lu.lo lu.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lu.c -fno-common -DPIC -o .libs/lu.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o luc.lo luc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c luc.c -fno-common -DPIC -o .libs/luc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hh.lo hh.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hh.c -fno-common -DPIC -o .libs/hh.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o qr.lo qr.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c qr.c -fno-common -DPIC -o .libs/qr.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o qrpt.lo qrpt.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c qrpt.c -fno-common -DPIC -o .libs/qrpt.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lq.lo lq.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lq.c -fno-common -DPIC -o .libs/lq.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ptlq.lo ptlq.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ptlq.c -fno-common -DPIC -o .libs/ptlq.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o svd.lo svd.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c svd.c -fno-common -DPIC -o .libs/svd.o In file included from svd.c:31: ./svdstep.c:379:34: warning: variable 'bq' set but not used [-Wunused-but-set-variable] double ak, bk, zk, ap, bp, aq, bq; ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o householder.lo householder.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c householder.c -fno-common -DPIC -o .libs/householder.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o householdercomplex.lo householdercomplex.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c householdercomplex.c -fno-common -DPIC -o .libs/householdercomplex.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hessenberg.lo hessenberg.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hessenberg.c -fno-common -DPIC -o .libs/hessenberg.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hesstri.lo hesstri.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hesstri.c -fno-common -DPIC -o .libs/hesstri.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o cholesky.lo cholesky.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c cholesky.c -fno-common -DPIC -o .libs/cholesky.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o choleskyc.lo choleskyc.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c choleskyc.c -fno-common -DPIC -o .libs/choleskyc.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o symmtd.lo symmtd.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symmtd.c -fno-common -DPIC -o .libs/symmtd.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hermtd.lo hermtd.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hermtd.c -fno-common -DPIC -o .libs/hermtd.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bidiag.lo bidiag.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bidiag.c -fno-common -DPIC -o .libs/bidiag.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o balance.lo balance.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c balance.c -fno-common -DPIC -o .libs/balance.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o balancemat.lo balancemat.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c balancemat.c -fno-common -DPIC -o .libs/balancemat.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgsllinalg.la multiply.lo exponential.lo tridiag.lo lu.lo luc.lo hh.lo qr.lo qrpt.lo lq.lo ptlq.lo svd.lo householder.lo householdercomplex.lo hessenberg.lo hesstri.lo cholesky.lo choleskyc.lo symmtd.lo hermtd.lo bidiag.lo balance.lo balancemat.lo -lm libtool: link: ar cru .libs/libgsllinalg.a .libs/multiply.o .libs/exponential.o .libs/tridiag.o .libs/lu.o .libs/luc.o .libs/hh.o .libs/qr.o .libs/qrpt.o .libs/lq.o .libs/ptlq.o .libs/svd.o .libs/householder.o .libs/householdercomplex.o .libs/hessenberg.o .libs/hesstri.o .libs/cholesky.o .libs/choleskyc.o .libs/symmtd.o .libs/hermtd.o .libs/bidiag.o .libs/balance.o .libs/balancemat.o libtool: link: ranlib .libs/libgsllinalg.a libtool: link: ( cd ".libs" && rm -f "libgsllinalg.la" && ln -s "../libgsllinalg.la" "libgsllinalg.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_linalg.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in statistics /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o mean.lo mean.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c mean.c -fno-common -DPIC -o .libs/mean.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o variance.lo variance.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c variance.c -fno-common -DPIC -o .libs/variance.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o absdev.lo absdev.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c absdev.c -fno-common -DPIC -o .libs/absdev.o In file included from absdev.c:7: ./absdev_source.c:41:28: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] const double delta = fabs(data[i * stride] - mean); ^ ./absdev_source.c:41:28: note: use function 'fabsl' instead const double delta = fabs(data[i * stride] - mean); ^~~~ fabsl 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o skew.lo skew.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c skew.c -fno-common -DPIC -o .libs/skew.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o kurtosis.lo kurtosis.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c kurtosis.c -fno-common -DPIC -o .libs/kurtosis.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o lag1.lo lag1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c lag1.c -fno-common -DPIC -o .libs/lag1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o p_variance.lo p_variance.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c p_variance.c -fno-common -DPIC -o .libs/p_variance.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c -fno-common -DPIC -o .libs/minmax.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ttest.lo ttest.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ttest.c -fno-common -DPIC -o .libs/ttest.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o median.lo median.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c median.c -fno-common -DPIC -o .libs/median.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o covariance.lo covariance.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c covariance.c -fno-common -DPIC -o .libs/covariance.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o quantiles.lo quantiles.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c quantiles.c -fno-common -DPIC -o .libs/quantiles.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o wmean.lo wmean.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wmean.c -fno-common -DPIC -o .libs/wmean.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o wvariance.lo wvariance.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wvariance.c -fno-common -DPIC -o .libs/wvariance.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o wabsdev.lo wabsdev.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wabsdev.c -fno-common -DPIC -o .libs/wabsdev.o In file included from wabsdev.c:7: ./wabsdev_source.c:43:35: warning: absolute value function 'fabs' given an argument of type 'long double' but has parameter of type 'double' which may cause truncation of value [-Wabsolute-value] const long double delta = fabs(data[i * stride] - wmean); ^ ./wabsdev_source.c:43:35: note: use function 'fabsl' instead const long double delta = fabs(data[i * stride] - wmean); ^~~~ fabsl 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o wskew.lo wskew.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wskew.c -fno-common -DPIC -o .libs/wskew.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o wkurtosis.lo wkurtosis.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c wkurtosis.c -fno-common -DPIC -o .libs/wkurtosis.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslstatistics.la mean.lo variance.lo absdev.lo skew.lo kurtosis.lo lag1.lo p_variance.lo minmax.lo ttest.lo median.lo covariance.lo quantiles.lo wmean.lo wvariance.lo wabsdev.lo wskew.lo wkurtosis.lo -lm libtool: link: ar cru .libs/libgslstatistics.a .libs/mean.o .libs/variance.o .libs/absdev.o .libs/skew.o .libs/kurtosis.o .libs/lag1.o .libs/p_variance.o .libs/minmax.o .libs/ttest.o .libs/median.o .libs/covariance.o .libs/quantiles.o .libs/wmean.o .libs/wvariance.o .libs/wabsdev.o .libs/wskew.o .libs/wkurtosis.o libtool: link: ranlib .libs/libgslstatistics.a libtool: link: ( cd ".libs" && rm -f "libgslstatistics.la" && ln -s "../libgslstatistics.la" "libgslstatistics.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_statistics.h gsl_statistics_char.h gsl_statistics_double.h gsl_statistics_float.h gsl_statistics_int.h gsl_statistics_long.h gsl_statistics_long_double.h gsl_statistics_short.h gsl_statistics_uchar.h gsl_statistics_uint.h gsl_statistics_ulong.h gsl_statistics_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in blas /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o blas.lo blas.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c blas.c -fno-common -DPIC -o .libs/blas.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslblas.la blas.lo -lm libtool: link: ar cru .libs/libgslblas.a .libs/blas.o libtool: link: ranlib .libs/libgslblas.a libtool: link: ( cd ".libs" && rm -f "libgslblas.la" && ln -s "../libgslblas.la" "libgslblas.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_blas.h gsl_blas_types.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in roots /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bisection.lo bisection.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bisection.c -fno-common -DPIC -o .libs/bisection.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o brent.lo brent.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c brent.c -fno-common -DPIC -o .libs/brent.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o falsepos.lo falsepos.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c falsepos.c -fno-common -DPIC -o .libs/falsepos.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o newton.lo newton.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c newton.c -fno-common -DPIC -o .libs/newton.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o secant.lo secant.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c secant.c -fno-common -DPIC -o .libs/secant.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o steffenson.lo steffenson.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c steffenson.c -fno-common -DPIC -o .libs/steffenson.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o convergence.lo convergence.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c convergence.c -fno-common -DPIC -o .libs/convergence.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fsolver.lo fsolver.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fsolver.c -fno-common -DPIC -o .libs/fsolver.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fdfsolver.lo fdfsolver.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdfsolver.c -fno-common -DPIC -o .libs/fdfsolver.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslroots.la bisection.lo brent.lo falsepos.lo newton.lo secant.lo steffenson.lo convergence.lo fsolver.lo fdfsolver.lo -lm libtool: link: ar cru .libs/libgslroots.a .libs/bisection.o .libs/brent.o .libs/falsepos.o .libs/newton.o .libs/secant.o .libs/steffenson.o .libs/convergence.o .libs/fsolver.o .libs/fdfsolver.o libtool: link: ranlib .libs/libgslroots.a libtool: link: ( cd ".libs" && rm -f "libgslroots.la" && ln -s "../libgslroots.la" "libgslroots.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_roots.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in err /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o error.lo error.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c error.c -fno-common -DPIC -o .libs/error.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o stream.lo stream.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c stream.c -fno-common -DPIC -o .libs/stream.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o message.lo message.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c message.c -fno-common -DPIC -o .libs/message.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o strerror.lo strerror.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c strerror.c -fno-common -DPIC -o .libs/strerror.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslerr.la error.lo stream.lo message.lo strerror.lo -lm libtool: link: ar cru .libs/libgslerr.a .libs/error.o .libs/stream.o .libs/message.o .libs/strerror.o libtool: link: ranlib .libs/libgslerr.a libtool: link: ( cd ".libs" && rm -f "libgslerr.la" && ln -s "../libgslerr.la" "libgslerr.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_errno.h gsl_message.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in min /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fsolver.lo fsolver.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fsolver.c -fno-common -DPIC -o .libs/fsolver.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o golden.lo golden.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c golden.c -fno-common -DPIC -o .libs/golden.o golden.c:49:27: warning: variable 'state' set but not used [-Wunused-but-set-variable] goldensection_state_t * state = (goldensection_state_t *) vstate; ^ golden.c:68:27: warning: variable 'state' set but not used [-Wunused-but-set-variable] goldensection_state_t * state = (goldensection_state_t *) vstate; ^ 2 warnings generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o brent.lo brent.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c brent.c -fno-common -DPIC -o .libs/brent.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o convergence.lo convergence.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c convergence.c -fno-common -DPIC -o .libs/convergence.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o bracketing.lo bracketing.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c bracketing.c -fno-common -DPIC -o .libs/bracketing.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o quad_golden.lo quad_golden.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c quad_golden.c -fno-common -DPIC -o .libs/quad_golden.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslmin.la fsolver.lo golden.lo brent.lo convergence.lo bracketing.lo quad_golden.lo -lm libtool: link: ar cru .libs/libgslmin.a .libs/fsolver.o .libs/golden.o .libs/brent.o .libs/convergence.o .libs/bracketing.o .libs/quad_golden.o libtool: link: ranlib .libs/libgslmin.a libtool: link: ( cd ".libs" && rm -f "libgslmin.la" && ln -s "../libgslmin.la" "libgslmin.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_min.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in permutation /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o init.lo init.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c init.c -fno-common -DPIC -o .libs/init.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o file.lo file.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c file.c -fno-common -DPIC -o .libs/file.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o permutation.lo permutation.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c permutation.c -fno-common -DPIC -o .libs/permutation.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o permute.lo permute.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c permute.c -fno-common -DPIC -o .libs/permute.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o canonical.lo canonical.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c canonical.c -fno-common -DPIC -o .libs/canonical.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c -fno-common -DPIC -o .libs/inline.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslpermutation.la init.lo file.lo permutation.lo permute.lo canonical.lo inline.lo -lm libtool: link: ar cru .libs/libgslpermutation.a .libs/init.o .libs/file.o .libs/permutation.o .libs/permute.o .libs/canonical.o .libs/inline.o libtool: link: ranlib .libs/libgslpermutation.a libtool: link: ( cd ".libs" && rm -f "libgslpermutation.la" && ln -s "../libgslpermutation.la" "libgslpermutation.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_permutation.h gsl_permute.h gsl_permute_char.h gsl_permute_complex_double.h gsl_permute_complex_float.h gsl_permute_complex_long_double.h gsl_permute_double.h gsl_permute_float.h gsl_permute_int.h gsl_permute_long.h gsl_permute_long_double.h gsl_permute_short.h gsl_permute_uchar.h gsl_permute_uint.h gsl_permute_ulong.h gsl_permute_ushort.h gsl_permute_vector.h gsl_permute_vector_char.h gsl_permute_vector_complex_double.h gsl_permute_vector_complex_float.h gsl_permute_vector_complex_long_double.h gsl_permute_vector_double.h gsl_permute_vector_float.h gsl_permute_vector_int.h gsl_permute_vector_long.h gsl_permute_vector_long_double.h gsl_permute_vector_short.h gsl_permute_vector_uchar.h gsl_permute_vector_uint.h gsl_permute_vector_ulong.h gsl_permute_vector_ushort.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in complex /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o math.lo math.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c math.c -fno-common -DPIC -o .libs/math.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o inline.lo inline.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c inline.c -fno-common -DPIC -o .libs/inline.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslcomplex.la math.lo inline.lo -lm libtool: link: ar cru .libs/libgslcomplex.a .libs/math.o .libs/inline.o libtool: link: ranlib .libs/libgslcomplex.a libtool: link: ( cd ".libs" && rm -f "libgslcomplex.la" && ln -s "../libgslcomplex.la" "libgslcomplex.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_complex.h gsl_complex_math.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in sys /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o minmax.lo minmax.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c minmax.c -fno-common -DPIC -o .libs/minmax.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o prec.lo prec.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c prec.c -fno-common -DPIC -o .libs/prec.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hypot.lo hypot.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hypot.c -fno-common -DPIC -o .libs/hypot.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o log1p.lo log1p.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c log1p.c -fno-common -DPIC -o .libs/log1p.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o expm1.lo expm1.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c expm1.c -fno-common -DPIC -o .libs/expm1.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o coerce.lo coerce.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c coerce.c -fno-common -DPIC -o .libs/coerce.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o invhyp.lo invhyp.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c invhyp.c -fno-common -DPIC -o .libs/invhyp.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o pow_int.lo pow_int.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c pow_int.c -fno-common -DPIC -o .libs/pow_int.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o infnan.lo infnan.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c infnan.c -fno-common -DPIC -o .libs/infnan.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fdiv.lo fdiv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fdiv.c -fno-common -DPIC -o .libs/fdiv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o fcmp.lo fcmp.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c fcmp.c -fno-common -DPIC -o .libs/fcmp.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o ldfrexp.lo ldfrexp.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c ldfrexp.c -fno-common -DPIC -o .libs/ldfrexp.o ldfrexp.c:63:13: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] else if (!finite (x)) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here extern int finite(double) ^ ldfrexp.c:88:12: warning: 'finite' is deprecated: first deprecated in macOS 10.9 - Use `isfinite((double)x)` instead. [-Wdeprecated-declarations] if (!finite (f)) ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/math.h:752:12: note: 'finite' has been explicitly marked deprecated here extern int finite(double) ^ 2 warnings generated. /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgslsys.la minmax.lo prec.lo hypot.lo log1p.lo expm1.lo coerce.lo invhyp.lo pow_int.lo infnan.lo fdiv.lo fcmp.lo ldfrexp.lo -lm libtool: link: ar cru .libs/libgslsys.a .libs/minmax.o .libs/prec.o .libs/hypot.o .libs/log1p.o .libs/expm1.o .libs/coerce.o .libs/invhyp.o .libs/pow_int.o .libs/infnan.o .libs/fdiv.o .libs/fcmp.o .libs/ldfrexp.o libtool: link: ranlib .libs/libgslsys.a libtool: link: ( cd ".libs" && rm -f "libgslsys.la" && ln -s "../libgslsys.la" "libgslsys.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_sys.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' Making install in eigen /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o jacobi.lo jacobi.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c jacobi.c -fno-common -DPIC -o .libs/jacobi.o jacobi.c:142:15: warning: variable 'redsum' set but not used [-Wunused-but-set-variable] double red, redsum = 0.0; ^ 1 warning generated. /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o symm.lo symm.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symm.c -fno-common -DPIC -o .libs/symm.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o symmv.lo symmv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c symmv.c -fno-common -DPIC -o .libs/symmv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o nonsymm.lo nonsymm.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nonsymm.c -fno-common -DPIC -o .libs/nonsymm.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o nonsymmv.lo nonsymmv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c nonsymmv.c -fno-common -DPIC -o .libs/nonsymmv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o herm.lo herm.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c herm.c -fno-common -DPIC -o .libs/herm.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o hermv.lo hermv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c hermv.c -fno-common -DPIC -o .libs/hermv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gensymm.lo gensymm.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gensymm.c -fno-common -DPIC -o .libs/gensymm.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gensymmv.lo gensymmv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gensymmv.c -fno-common -DPIC -o .libs/gensymmv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o genherm.lo genherm.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genherm.c -fno-common -DPIC -o .libs/genherm.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o genhermv.lo genhermv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genhermv.c -fno-common -DPIC -o .libs/genhermv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o gen.lo gen.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gen.c -fno-common -DPIC -o .libs/gen.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o genv.lo genv.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c genv.c -fno-common -DPIC -o .libs/genv.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o sort.lo sort.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c sort.c -fno-common -DPIC -o .libs/sort.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o francis.lo francis.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c francis.c -fno-common -DPIC -o .libs/francis.o /bin/sh ../libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o schur.lo schur.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I.. -I.. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c schur.c -fno-common -DPIC -o .libs/schur.o /bin/sh ../libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o libgsleigen.la jacobi.lo symm.lo symmv.lo nonsymm.lo nonsymmv.lo herm.lo hermv.lo gensymm.lo gensymmv.lo genherm.lo genhermv.lo gen.lo genv.lo sort.lo francis.lo schur.lo -lm libtool: link: ar cru .libs/libgsleigen.a .libs/jacobi.o .libs/symm.o .libs/symmv.o .libs/nonsymm.o .libs/nonsymmv.o .libs/herm.o .libs/hermv.o .libs/gensymm.o .libs/gensymmv.o .libs/genherm.o .libs/genhermv.o .libs/gen.o .libs/genv.o .libs/sort.o .libs/francis.o .libs/schur.o libtool: link: ranlib .libs/libgsleigen.a libtool: link: ( cd ".libs" && rm -f "libgsleigen.la" && ln -s "../libgsleigen.la" "libgsleigen.la" ) make[2]: Nothing to be done for `install-exec-am'. test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || .././install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_eigen.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' /bin/sh ./libtool --tag=CC --mode=compile clang -arch x86_64 -DHAVE_CONFIG_H -I. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c -o version.lo version.c libtool: compile: clang -arch x86_64 -DHAVE_CONFIG_H -I. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c version.c -fno-common -DPIC -o .libs/version.o /bin/sh ./libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -version-info 14:0:14 -L/opt/R/x86_64/lib -o libgsl.la -rpath /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib version.lo block/libgslblock.la matrix/libgslmatrix.la vector/libgslvector.la rng/libgslrng.la randist/libgslrandist.la cdf/libgslcdf.la cblas/libgslcblas.la specfunc/libgslspecfunc.la linalg/libgsllinalg.la statistics/libgslstatistics.la blas/libgslblas.la roots/libgslroots.la err/libgslerr.la min/libgslmin.la permutation/libgslpermutation.la complex/libgslcomplex.la sys/libgslsys.la eigen/libgsleigen.la -lm libtool: link: (cd .libs/libgsl.lax/libgslblock.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/block/.libs/libgslblock.a") libtool: link: (cd .libs/libgsl.lax/libgslmatrix.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/matrix/.libs/libgslmatrix.a") libtool: link: (cd .libs/libgsl.lax/libgslvector.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/vector/.libs/libgslvector.a") libtool: link: (cd .libs/libgsl.lax/libgslrng.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/rng/.libs/libgslrng.a") libtool: link: (cd .libs/libgsl.lax/libgslrandist.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/randist/.libs/libgslrandist.a") libtool: link: (cd .libs/libgsl.lax/libgslcdf.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/cdf/.libs/libgslcdf.a") libtool: link: (cd .libs/libgsl.lax/libgslspecfunc.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/specfunc/.libs/libgslspecfunc.a") libtool: link: (cd .libs/libgsl.lax/libgsllinalg.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/linalg/.libs/libgsllinalg.a") libtool: link: (cd .libs/libgsl.lax/libgslstatistics.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/statistics/.libs/libgslstatistics.a") libtool: link: (cd .libs/libgsl.lax/libgslblas.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/blas/.libs/libgslblas.a") libtool: link: (cd .libs/libgsl.lax/libgslroots.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/roots/.libs/libgslroots.a") libtool: link: (cd .libs/libgsl.lax/libgslerr.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/err/.libs/libgslerr.a") libtool: link: (cd .libs/libgsl.lax/libgslmin.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/min/.libs/libgslmin.a") libtool: link: (cd .libs/libgsl.lax/libgslpermutation.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/permutation/.libs/libgslpermutation.a") libtool: link: (cd .libs/libgsl.lax/libgslcomplex.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/complex/.libs/libgslcomplex.a") libtool: link: (cd .libs/libgsl.lax/libgslsys.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/sys/.libs/libgslsys.a") libtool: link: (cd .libs/libgsl.lax/libgsleigen.a && ar x "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/eigen/.libs/libgsleigen.a") libtool: link: clang -arch x86_64 -dynamiclib -o .libs/libgsl.0.dylib .libs/version.o .libs/libgsl.lax/libgslblock.a/file.o .libs/libgsl.lax/libgslblock.a/block.o .libs/libgsl.lax/libgslblock.a/init.o .libs/libgsl.lax/libgslmatrix.a/minmax.o .libs/libgsl.lax/libgslmatrix.a/getset.o .libs/libgsl.lax/libgslmatrix.a/file.o .libs/libgsl.lax/libgslmatrix.a/swap.o .libs/libgsl.lax/libgslmatrix.a/oper.o .libs/libgsl.lax/libgslmatrix.a/matrix.o .libs/libgsl.lax/libgslmatrix.a/view.o .libs/libgsl.lax/libgslmatrix.a/prop.o .libs/libgsl.lax/libgslmatrix.a/init.o .libs/libgsl.lax/libgslmatrix.a/rowcol.o .libs/libgsl.lax/libgslmatrix.a/submatrix.o .libs/libgsl.lax/libgslmatrix.a/copy.o .libs/libgsl.lax/libgslvector.a/minmax.o .libs/libgsl.lax/libgslvector.a/reim.o .libs/libgsl.lax/libgslvector.a/file.o .libs/libgsl.lax/libgslvector.a/subvector.o .libs/libgsl.lax/libgslvector.a/swap.o .libs/libgsl.lax/libgslvector.a/oper.o .libs/libgsl.lax/libgslvector.a/view.o .libs/libgsl.lax/libgslvector.a/prop.o .libs/libgsl.lax/libgslvector.a/init.o .libs/libgsl.lax/libgslvector.a/vector.o .libs/libgsl.lax/libgslvector.a/copy.o .libs/libgsl.lax/libgslrng.a/gfsr4.o .libs/libgsl.lax/libgslrng.a/ran2.o .libs/libgsl.lax/libgslrng.a/ranlxd.o .libs/libgsl.lax/libgslrng.a/ranmar.o .libs/libgsl.lax/libgslrng.a/r250.o .libs/libgsl.lax/libgslrng.a/uni32.o .libs/libgsl.lax/libgslrng.a/ranf.o .libs/libgsl.lax/libgslrng.a/types.o .libs/libgsl.lax/libgslrng.a/vax.o .libs/libgsl.lax/libgslrng.a/file.o .libs/libgsl.lax/libgslrng.a/knuthran.o .libs/libgsl.lax/libgslrng.a/slatec.o .libs/libgsl.lax/libgslrng.a/randu.o .libs/libgsl.lax/libgslrng.a/uni.o .libs/libgsl.lax/libgslrng.a/ran1.o .libs/libgsl.lax/libgslrng.a/minstd.o .libs/libgsl.lax/libgslrng.a/inline.o .libs/libgsl.lax/libgslrng.a/rng.o .libs/libgsl.lax/libgslrng.a/taus113.o .libs/libgsl.lax/libgslrng.a/knuthran2.o .libs/libgsl.lax/libgslrng.a/knuthran2002.o .libs/libgsl.lax/libgslrng.a/zuf.o .libs/libgsl.lax/libgslrng.a/cmrg.o .libs/libgsl.lax/libgslrng.a/fishman18.o .libs/libgsl.lax/libgslrng.a/ran0.o .libs/libgsl.lax/libgslrng.a/rand48.o .libs/libgsl.lax/libgslrng.a/ranlux.o .libs/libgsl.lax/libgslrng.a/borosh13.o .libs/libgsl.lax/libgslrng.a/rand.o .libs/libgsl.lax/libgslrng.a/mrg.o .libs/libgsl.lax/libgslrng.a/transputer.o .libs/libgsl.lax/libgslrng.a/ran3.o .libs/libgsl.lax/libgslrng.a/waterman14.o .libs/libgsl.lax/libgslrng.a/mt.o .libs/libgsl.lax/libgslrng.a/lecuyer21.o .libs/libgsl.lax/libgslrng.a/fishman20.o .libs/libgsl.lax/libgslrng.a/ranlxs.o .libs/libgsl.lax/libgslrng.a/tt.o .libs/libgsl.lax/libgslrng.a/default.o .libs/libgsl.lax/libgslrng.a/random.o .libs/libgsl.lax/libgslrng.a/fishman2x.o .libs/libgsl.lax/libgslrng.a/taus.o .libs/libgsl.lax/libgslrng.a/coveyou.o .libs/libgsl.lax/libgslrandist.a/dirichlet.o .libs/libgsl.lax/libgslrandist.a/multinomial.o .libs/libgsl.lax/libgslrandist.a/levy.o .libs/libgsl.lax/libgslrandist.a/pareto.o .libs/libgsl.lax/libgslrandist.a/binomial.o .libs/libgsl.lax/libgslrandist.a/laplace.o .libs/libgsl.lax/libgslrandist.a/gausszig.o .libs/libgsl.lax/libgslrandist.a/poisson.o .libs/libgsl.lax/libgslrandist.a/beta.o .libs/libgsl.lax/libgslrandist.a/weibull.o .libs/libgsl.lax/libgslrandist.a/discrete.o .libs/libgsl.lax/libgslrandist.a/binomial_tpe.o .libs/libgsl.lax/libgslrandist.a/logistic.o .libs/libgsl.lax/libgslrandist.a/sphere.o .libs/libgsl.lax/libgslrandist.a/erlang.o .libs/libgsl.lax/libgslrandist.a/tdist.o .libs/libgsl.lax/libgslrandist.a/chisq.o .libs/libgsl.lax/libgslrandist.a/rayleigh.o .libs/libgsl.lax/libgslrandist.a/lognormal.o .libs/libgsl.lax/libgslrandist.a/nbinomial.o .libs/libgsl.lax/libgslrandist.a/gumbel.o .libs/libgsl.lax/libgslrandist.a/exppow.o .libs/libgsl.lax/libgslrandist.a/logarithmic.o .libs/libgsl.lax/libgslrandist.a/bigauss.o .libs/libgsl.lax/libgslrandist.a/gausstail.o .libs/libgsl.lax/libgslrandist.a/bernoulli.o .libs/libgsl.lax/libgslrandist.a/gauss.o .libs/libgsl.lax/libgslrandist.a/gamma.o .libs/libgsl.lax/libgslrandist.a/flat.o .libs/libgsl.lax/libgslrandist.a/cauchy.o .libs/libgsl.lax/libgslrandist.a/fdist.o .libs/libgsl.lax/libgslrandist.a/hyperg.o .libs/libgsl.lax/libgslrandist.a/geometric.o .libs/libgsl.lax/libgslrandist.a/landau.o .libs/libgsl.lax/libgslrandist.a/exponential.o .libs/libgsl.lax/libgslrandist.a/shuffle.o .libs/libgsl.lax/libgslrandist.a/pascal.o .libs/libgsl.lax/libgslcdf.a/pareto.o .libs/libgsl.lax/libgslcdf.a/binomial.o .libs/libgsl.lax/libgslcdf.a/logisticinv.o .libs/libgsl.lax/libgslcdf.a/laplace.o .libs/libgsl.lax/libgslcdf.a/poisson.o .libs/libgsl.lax/libgslcdf.a/beta.o .libs/libgsl.lax/libgslcdf.a/weibull.o .libs/libgsl.lax/libgslcdf.a/tdistinv.o .libs/libgsl.lax/libgslcdf.a/laplaceinv.o .libs/libgsl.lax/libgslcdf.a/logistic.o .libs/libgsl.lax/libgslcdf.a/betainv.o .libs/libgsl.lax/libgslcdf.a/hypergeometric.o .libs/libgsl.lax/libgslcdf.a/tdist.o .libs/libgsl.lax/libgslcdf.a/chisq.o .libs/libgsl.lax/libgslcdf.a/rayleigh.o .libs/libgsl.lax/libgslcdf.a/fdistinv.o .libs/libgsl.lax/libgslcdf.a/lognormal.o .libs/libgsl.lax/libgslcdf.a/gumbel2inv.o .libs/libgsl.lax/libgslcdf.a/nbinomial.o .libs/libgsl.lax/libgslcdf.a/weibullinv.o .libs/libgsl.lax/libgslcdf.a/gumbel1inv.o .libs/libgsl.lax/libgslcdf.a/gaussinv.o .libs/libgsl.lax/libgslcdf.a/gammainv.o .libs/libgsl.lax/libgslcdf.a/exppow.o .libs/libgsl.lax/libgslcdf.a/flatinv.o .libs/libgsl.lax/libgslcdf.a/gumbel2.o .libs/libgsl.lax/libgslcdf.a/lognormalinv.o .libs/libgsl.lax/libgslcdf.a/gauss.o .libs/libgsl.lax/libgslcdf.a/gamma.o .libs/libgsl.lax/libgslcdf.a/paretoinv.o .libs/libgsl.lax/libgslcdf.a/flat.o .libs/libgsl.lax/libgslcdf.a/cauchy.o .libs/libgsl.lax/libgslcdf.a/rayleighinv.o .libs/libgsl.lax/libgslcdf.a/fdist.o .libs/libgsl.lax/libgslcdf.a/gumbel1.o .libs/libgsl.lax/libgslcdf.a/geometric.o .libs/libgsl.lax/libgslcdf.a/cauchyinv.o .libs/libgsl.lax/libgslcdf.a/exponentialinv.o .libs/libgsl.lax/libgslcdf.a/chisqinv.o .libs/libgsl.lax/libgslcdf.a/exponential.o .libs/libgsl.lax/libgslcdf.a/pascal.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Inu.o .libs/libgsl.lax/libgslspecfunc.a/zeta.o .libs/libgsl.lax/libgslspecfunc.a/gegenbauer.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y0.o .libs/libgsl.lax/libgslspecfunc.a/shint.o .libs/libgsl.lax/libgslspecfunc.a/beta_inc.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jnu.o .libs/libgsl.lax/libgslspecfunc.a/ellint.o .libs/libgsl.lax/libgslspecfunc.a/debye.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Knu.o .libs/libgsl.lax/libgslspecfunc.a/laguerre.o .libs/libgsl.lax/libgslspecfunc.a/expint.o .libs/libgsl.lax/libgslspecfunc.a/coulomb.o .libs/libgsl.lax/libgslspecfunc.a/legendre_con.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_coeff.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_radfunc.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_workspace.o .libs/libgsl.lax/libgslspecfunc.a/lambert.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Ynu.o .libs/libgsl.lax/libgslspecfunc.a/expint3.o .libs/libgsl.lax/libgslspecfunc.a/beta.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Yn.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F0.o .libs/libgsl.lax/libgslspecfunc.a/dilog.o .libs/libgsl.lax/libgslspecfunc.a/bessel_sequence.o .libs/libgsl.lax/libgslspecfunc.a/airy_zero.o .libs/libgsl.lax/libgslspecfunc.a/coulomb_bound.o .libs/libgsl.lax/libgslspecfunc.a/psi.o .libs/libgsl.lax/libgslspecfunc.a/legendre_poly.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Jn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_y.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_charv.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K0.o .libs/libgsl.lax/libgslspecfunc.a/result.o .libs/libgsl.lax/libgslspecfunc.a/bessel_k.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J0.o .libs/libgsl.lax/libgslspecfunc.a/atanint.o .libs/libgsl.lax/libgslspecfunc.a/mathieu_angfunc.o .libs/libgsl.lax/libgslspecfunc.a/trig.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Kn.o .libs/libgsl.lax/libgslspecfunc.a/synchrotron.o .libs/libgsl.lax/libgslspecfunc.a/erfc.o .libs/libgsl.lax/libgslspecfunc.a/legendre_H3d.o .libs/libgsl.lax/libgslspecfunc.a/sinint.o .libs/libgsl.lax/libgslspecfunc.a/bessel_I0.o .libs/libgsl.lax/libgslspecfunc.a/elljac.o .libs/libgsl.lax/libgslspecfunc.a/dawson.o .libs/libgsl.lax/libgslspecfunc.a/bessel_K1.o .libs/libgsl.lax/libgslspecfunc.a/log.o .libs/libgsl.lax/libgslspecfunc.a/bessel_j.o .libs/libgsl.lax/libgslspecfunc.a/bessel_In.o .libs/libgsl.lax/libgslspecfunc.a/legendre_Qn.o .libs/libgsl.lax/libgslspecfunc.a/bessel_J1.o .libs/libgsl.lax/libgslspecfunc.a/bessel.o .libs/libgsl.lax/libgslspecfunc.a/gamma.o .libs/libgsl.lax/libgslspecfunc.a/airy_der.o .libs/libgsl.lax/libgslspecfunc.a/transport.o .libs/libgsl.lax/libgslspecfunc.a/coupling.o .libs/libgsl.lax/libgslspecfunc.a/poch.o .libs/libgsl.lax/libgslspecfunc.a/airy.o .libs/libgsl.lax/libgslspecfunc.a/gamma_inc.o .libs/libgsl.lax/libgslspecfunc.a/bessel_temme.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_U.o .libs/libgsl.lax/libgslspecfunc.a/exp.o .libs/libgsl.lax/libgslspecfunc.a/hyperg.o .libs/libgsl.lax/libgslspecfunc.a/bessel_Y1.o .libs/libgsl.lax/libgslspecfunc.a/pow_int.o .libs/libgsl.lax/libgslspecfunc.a/bessel_amp_phase.o .libs/libgsl.lax/libgslspecfunc.a/bessel_olver.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_1F1.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_0F1.o .libs/libgsl.lax/libgslspecfunc.a/bessel_i.o .libs/libgsl.lax/libgslspecfunc.a/elementary.o .libs/libgsl.lax/libgslspecfunc.a/hyperg_2F1.o .libs/libgsl.lax/libgslspecfunc.a/clausen.o .libs/libgsl.lax/libgslspecfunc.a/fermi_dirac.o .libs/libgsl.lax/libgslspecfunc.a/bessel_zero.o .libs/libgsl.lax/libgsllinalg.a/qrpt.o .libs/libgsl.lax/libgsllinalg.a/balance.o .libs/libgsl.lax/libgsllinalg.a/lu.o .libs/libgsl.lax/libgsllinalg.a/svd.o .libs/libgsl.lax/libgsllinalg.a/hermtd.o .libs/libgsl.lax/libgsllinalg.a/tridiag.o .libs/libgsl.lax/libgsllinalg.a/lq.o .libs/libgsl.lax/libgsllinalg.a/householder.o .libs/libgsl.lax/libgsllinalg.a/multiply.o .libs/libgsl.lax/libgsllinalg.a/qr.o .libs/libgsl.lax/libgsllinalg.a/luc.o .libs/libgsl.lax/libgsllinalg.a/choleskyc.o .libs/libgsl.lax/libgsllinalg.a/householdercomplex.o .libs/libgsl.lax/libgsllinalg.a/hesstri.o .libs/libgsl.lax/libgsllinalg.a/symmtd.o .libs/libgsl.lax/libgsllinalg.a/bidiag.o .libs/libgsl.lax/libgsllinalg.a/cholesky.o .libs/libgsl.lax/libgsllinalg.a/hh.o .libs/libgsl.lax/libgsllinalg.a/ptlq.o .libs/libgsl.lax/libgsllinalg.a/hessenberg.o .libs/libgsl.lax/libgsllinalg.a/balancemat.o .libs/libgsl.lax/libgsllinalg.a/exponential.o .libs/libgsl.lax/libgslstatistics.a/ttest.o .libs/libgsl.lax/libgslstatistics.a/minmax.o .libs/libgsl.lax/libgslstatistics.a/kurtosis.o .libs/libgsl.lax/libgslstatistics.a/wkurtosis.o .libs/libgsl.lax/libgslstatistics.a/wabsdev.o .libs/libgsl.lax/libgslstatistics.a/quantiles.o .libs/libgsl.lax/libgslstatistics.a/lag1.o .libs/libgsl.lax/libgslstatistics.a/median.o .libs/libgsl.lax/libgslstatistics.a/mean.o .libs/libgsl.lax/libgslstatistics.a/wmean.o .libs/libgsl.lax/libgslstatistics.a/wvariance.o .libs/libgsl.lax/libgslstatistics.a/skew.o .libs/libgsl.lax/libgslstatistics.a/absdev.o .libs/libgsl.lax/libgslstatistics.a/p_variance.o .libs/libgsl.lax/libgslstatistics.a/wskew.o .libs/libgsl.lax/libgslstatistics.a/covariance.o .libs/libgsl.lax/libgslstatistics.a/variance.o .libs/libgsl.lax/libgslblas.a/blas.o .libs/libgsl.lax/libgslroots.a/fsolver.o .libs/libgsl.lax/libgslroots.a/convergence.o .libs/libgsl.lax/libgslroots.a/bisection.o .libs/libgsl.lax/libgslroots.a/steffenson.o .libs/libgsl.lax/libgslroots.a/secant.o .libs/libgsl.lax/libgslroots.a/newton.o .libs/libgsl.lax/libgslroots.a/brent.o .libs/libgsl.lax/libgslroots.a/falsepos.o .libs/libgsl.lax/libgslroots.a/fdfsolver.o .libs/libgsl.lax/libgslerr.a/error.o .libs/libgsl.lax/libgslerr.a/strerror.o .libs/libgsl.lax/libgslerr.a/message.o .libs/libgsl.lax/libgslerr.a/stream.o .libs/libgsl.lax/libgslmin.a/bracketing.o .libs/libgsl.lax/libgslmin.a/fsolver.o .libs/libgsl.lax/libgslmin.a/convergence.o .libs/libgsl.lax/libgslmin.a/golden.o .libs/libgsl.lax/libgslmin.a/quad_golden.o .libs/libgsl.lax/libgslmin.a/brent.o .libs/libgsl.lax/libgslpermutation.a/permute.o .libs/libgsl.lax/libgslpermutation.a/file.o .libs/libgsl.lax/libgslpermutation.a/permutation.o .libs/libgsl.lax/libgslpermutation.a/inline.o .libs/libgsl.lax/libgslpermutation.a/canonical.o .libs/libgsl.lax/libgslpermutation.a/init.o .libs/libgsl.lax/libgslcomplex.a/inline.o .libs/libgsl.lax/libgslcomplex.a/math.o .libs/libgsl.lax/libgslsys.a/minmax.o .libs/libgsl.lax/libgslsys.a/log1p.o .libs/libgsl.lax/libgslsys.a/hypot.o .libs/libgsl.lax/libgslsys.a/expm1.o .libs/libgsl.lax/libgslsys.a/fdiv.o .libs/libgsl.lax/libgslsys.a/prec.o .libs/libgsl.lax/libgslsys.a/coerce.o .libs/libgsl.lax/libgslsys.a/invhyp.o .libs/libgsl.lax/libgslsys.a/infnan.o .libs/libgsl.lax/libgslsys.a/ldfrexp.o .libs/libgsl.lax/libgslsys.a/fcmp.o .libs/libgsl.lax/libgslsys.a/pow_int.o .libs/libgsl.lax/libgsleigen.a/genhermv.o .libs/libgsl.lax/libgsleigen.a/schur.o .libs/libgsl.lax/libgsleigen.a/gensymm.o .libs/libgsl.lax/libgsleigen.a/herm.o .libs/libgsl.lax/libgsleigen.a/gen.o .libs/libgsl.lax/libgsleigen.a/nonsymm.o .libs/libgsl.lax/libgsleigen.a/gensymmv.o .libs/libgsl.lax/libgsleigen.a/nonsymmv.o .libs/libgsl.lax/libgsleigen.a/hermv.o .libs/libgsl.lax/libgsleigen.a/genv.o .libs/libgsl.lax/libgsleigen.a/jacobi.o .libs/libgsl.lax/libgsleigen.a/symm.o .libs/libgsl.lax/libgsleigen.a/symmv.o .libs/libgsl.lax/libgsleigen.a/sort.o .libs/libgsl.lax/libgsleigen.a/genherm.o .libs/libgsl.lax/libgsleigen.a/francis.o -L/opt/R/x86_64/lib cblas/.libs/libgslcblas.dylib -lm -arch x86_64 -install_name /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.0.dylib -compatibility_version 15 -current_version 15.0 -Wl,-single_module libtool: link: dsymutil .libs/libgsl.0.dylib || : libtool: link: (cd ".libs" && rm -f "libgsl.dylib" && ln -s "libgsl.0.dylib" "libgsl.dylib") libtool: link: rm -fr .libs/libgsl.lax libtool: link: ( cd ".libs" && rm -f "libgsl.la" && ln -s "../libgsl.la" "libgsl.la" ) clang -arch x86_64 -DHAVE_CONFIG_H -I. -I/opt/R/x86_64/include -falign-functions=64 -Wall -g -O2 -c gsl-randist.c /bin/sh ./libtool --tag=CC --mode=link clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -L/opt/R/x86_64/lib -o gsl-randist gsl-randist.o libgsl.la cblas/libgslcblas.la -lm libtool: link: clang -arch x86_64 -falign-functions=64 -Wall -g -O2 -o .libs/gsl-randist gsl-randist.o -L/opt/R/x86_64/lib ./.libs/libgsl.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gsl-1.13/cblas/.libs/libgslcblas.dylib cblas/.libs/libgslcblas.dylib -lm creating gsl-config creating gsl.pc test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib" /bin/sh ./libtool --mode=install /usr/bin/install -c libgsl.la '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib' libtool: install: /usr/bin/install -c .libs/libgsl.0.dylib /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.0.dylib libtool: install: (cd /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib && { ln -s -f libgsl.0.dylib libgsl.dylib || { rm -f libgsl.dylib && ln -s libgsl.0.dylib libgsl.dylib; }; }) libtool: install: /usr/bin/install -c .libs/libgsl.lai /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/libgsl.la ---------------------------------------------------------------------- Libraries have been installed in: /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `DYLD_LIBRARY_PATH' environment variable during execution See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" /bin/sh ./libtool --mode=install /usr/bin/install -c gsl-randist '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin' libtool: install: /usr/bin/install -c .libs/gsl-randist /Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin/gsl-randist test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin" /usr/bin/install -c gsl-config '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/bin' test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal" /usr/bin/install -c -m 644 gsl.m4 '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/share/aclocal' test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig" /usr/bin/install -c -m 644 gsl.pc '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/lib/pkgconfig' test -z "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" || ./install-sh -c -d "/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl" /usr/bin/install -c -m 644 gsl_math.h gsl_pow_int.h gsl_nan.h gsl_machine.h gsl_mode.h gsl_precision.h gsl_types.h gsl_version.h gsl_minmax.h gsl_inline.h '/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include/gsl' configure: Using the following compilation and linking flags for flowClust configure: PKG_CFLAGS= -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include configure: PKG_LIBS= configure: FLOWCLUST_DEFS=-DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC configure: Compiling using GSL version: '1.13.0'. configure: Using bundled GSL: 'yes'. configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c BoxCox.c -o BoxCox.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c BoxCoxPriors.c -o BoxCoxPriors.o BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable] int *itersolve = p->itersolve; ^ BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable] int iter = p->iter; ^ BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable] double *nu0 = p->nu0, kappa0 = p->kappa0; ^ BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable] rowPrecision, rowZ, rowLambda0; ^ BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable] int model = *p->model; ^ BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable] gsl_matrix *Precision = p->Precision; // will be updated ^ BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable] gsl_vector *SumZlogY = p->SumZlogY; ^ 7 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c Nu.c -o Nu.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c flowClust.c -o flowClust.o flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable] matrixZUY2; ^ flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable] rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2; ^ flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable] rowYTransS, rowZUY, subRowZUY, rowZ, rowZUY2, subRowZUY2; ^ flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable] int i=0; ^ flowClust.c:10:27: warning: unused variable 'CEntries' [-Wunused-const-variable] static const R_CMethodDef CEntries[] = { { "flowClust", (DL_FUNC) & flowClust, ^ 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c flowClustGaussian.c -o flowClustGaussian.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/Users/biocbuild/bbs-3.20-bioc/meat/flowClust/src/gslbuild/include -DGSL_MAJOR=1 -DGSL_MINOR=13 -DGSL_STATIC -fPIC -falign-functions=64 -Wall -g -O2 -c ranMVNT.c -o ranMVNT.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o flowClust.so BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o gsl-1.13/blas/.libs/blas.o gsl-1.13/block/.libs/block.o gsl-1.13/block/.libs/file.o gsl-1.13/block/.libs/init.o gsl-1.13/cblas/.libs/caxpy.o gsl-1.13/cblas/.libs/ccopy.o gsl-1.13/cblas/.libs/cdotc_sub.o gsl-1.13/cblas/.libs/cdotu_sub.o gsl-1.13/cblas/.libs/cgbmv.o gsl-1.13/cblas/.libs/cgemm.o gsl-1.13/cblas/.libs/cgemv.o gsl-1.13/cblas/.libs/cgerc.o gsl-1.13/cblas/.libs/cgeru.o gsl-1.13/cblas/.libs/chbmv.o gsl-1.13/cblas/.libs/chemm.o gsl-1.13/cblas/.libs/chemv.o gsl-1.13/cblas/.libs/cher.o gsl-1.13/cblas/.libs/cher2.o gsl-1.13/cblas/.libs/cher2k.o gsl-1.13/cblas/.libs/cherk.o gsl-1.13/cblas/.libs/chpmv.o gsl-1.13/cblas/.libs/chpr.o gsl-1.13/cblas/.libs/chpr2.o gsl-1.13/cblas/.libs/cscal.o gsl-1.13/cblas/.libs/csscal.o gsl-1.13/cblas/.libs/cswap.o gsl-1.13/cblas/.libs/csymm.o gsl-1.13/cblas/.libs/csyr2k.o gsl-1.13/cblas/.libs/csyrk.o gsl-1.13/cblas/.libs/ctbmv.o gsl-1.13/cblas/.libs/ctbsv.o gsl-1.13/cblas/.libs/ctpmv.o gsl-1.13/cblas/.libs/ctpsv.o gsl-1.13/cblas/.libs/ctrmm.o gsl-1.13/cblas/.libs/ctrmv.o gsl-1.13/cblas/.libs/ctrsm.o gsl-1.13/cblas/.libs/ctrsv.o gsl-1.13/cblas/.libs/dasum.o gsl-1.13/cblas/.libs/daxpy.o gsl-1.13/cblas/.libs/dcopy.o gsl-1.13/cblas/.libs/ddot.o gsl-1.13/cblas/.libs/dgbmv.o gsl-1.13/cblas/.libs/dgemm.o gsl-1.13/cblas/.libs/dgemv.o gsl-1.13/cblas/.libs/dger.o gsl-1.13/cblas/.libs/dnrm2.o gsl-1.13/cblas/.libs/drot.o gsl-1.13/cblas/.libs/drotg.o gsl-1.13/cblas/.libs/drotm.o gsl-1.13/cblas/.libs/drotmg.o gsl-1.13/cblas/.libs/dsbmv.o gsl-1.13/cblas/.libs/dscal.o gsl-1.13/cblas/.libs/dsdot.o gsl-1.13/cblas/.libs/dspmv.o gsl-1.13/cblas/.libs/dspr.o gsl-1.13/cblas/.libs/dspr2.o gsl-1.13/cblas/.libs/dswap.o gsl-1.13/cblas/.libs/dsymm.o gsl-1.13/cblas/.libs/dsymv.o gsl-1.13/cblas/.libs/dsyr.o gsl-1.13/cblas/.libs/dsyr2.o gsl-1.13/cblas/.libs/dsyr2k.o gsl-1.13/cblas/.libs/dsyrk.o gsl-1.13/cblas/.libs/dtbmv.o gsl-1.13/cblas/.libs/dtbsv.o gsl-1.13/cblas/.libs/dtpmv.o gsl-1.13/cblas/.libs/dtpsv.o gsl-1.13/cblas/.libs/dtrmm.o gsl-1.13/cblas/.libs/dtrmv.o gsl-1.13/cblas/.libs/dtrsm.o gsl-1.13/cblas/.libs/dtrsv.o gsl-1.13/cblas/.libs/dzasum.o gsl-1.13/cblas/.libs/dznrm2.o gsl-1.13/cblas/.libs/icamax.o gsl-1.13/cblas/.libs/idamax.o gsl-1.13/cblas/.libs/isamax.o gsl-1.13/cblas/.libs/izamax.o gsl-1.13/cblas/.libs/sasum.o gsl-1.13/cblas/.libs/saxpy.o gsl-1.13/cblas/.libs/scasum.o gsl-1.13/cblas/.libs/scnrm2.o gsl-1.13/cblas/.libs/scopy.o gsl-1.13/cblas/.libs/sdot.o gsl-1.13/cblas/.libs/sdsdot.o gsl-1.13/cblas/.libs/sgbmv.o gsl-1.13/cblas/.libs/sgemm.o gsl-1.13/cblas/.libs/sgemv.o gsl-1.13/cblas/.libs/sger.o gsl-1.13/cblas/.libs/snrm2.o gsl-1.13/cblas/.libs/srot.o gsl-1.13/cblas/.libs/srotg.o gsl-1.13/cblas/.libs/srotm.o gsl-1.13/cblas/.libs/srotmg.o gsl-1.13/cblas/.libs/ssbmv.o gsl-1.13/cblas/.libs/sscal.o gsl-1.13/cblas/.libs/sspmv.o gsl-1.13/cblas/.libs/sspr.o gsl-1.13/cblas/.libs/sspr2.o gsl-1.13/cblas/.libs/sswap.o gsl-1.13/cblas/.libs/ssymm.o gsl-1.13/cblas/.libs/ssymv.o gsl-1.13/cblas/.libs/ssyr.o gsl-1.13/cblas/.libs/ssyr2.o gsl-1.13/cblas/.libs/ssyr2k.o gsl-1.13/cblas/.libs/ssyrk.o gsl-1.13/cblas/.libs/stbmv.o gsl-1.13/cblas/.libs/stbsv.o gsl-1.13/cblas/.libs/stpmv.o gsl-1.13/cblas/.libs/stpsv.o gsl-1.13/cblas/.libs/strmm.o gsl-1.13/cblas/.libs/strmv.o gsl-1.13/cblas/.libs/strsm.o gsl-1.13/cblas/.libs/strsv.o gsl-1.13/cblas/.libs/xerbla.o gsl-1.13/cblas/.libs/zaxpy.o gsl-1.13/cblas/.libs/zcopy.o gsl-1.13/cblas/.libs/zdotc_sub.o gsl-1.13/cblas/.libs/zdotu_sub.o gsl-1.13/cblas/.libs/zdscal.o gsl-1.13/cblas/.libs/zgbmv.o gsl-1.13/cblas/.libs/zgemm.o 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gsl-1.13/vector/.libs/view.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-flowClust/00new/flowClust/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘Map’ in package ‘flowClust’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flowClust)
flowClust.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(flowClust) Attaching package: 'flowClust' The following object is masked from 'package:graphics': box The following object is masked from 'package:base': Map > win32_flag = .Platform$OS.type == "windows" && .Machine$sizeof.pointer != 8 > if(!win32_flag) + test_check("flowClust") [ FAIL 0 | WARN 10 | SKIP 2 | PASS 40 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • empty test (1): 'test_1d.R:116:1' • to temporarily bypass bioc check error for windows and aarch64 linux (1): 'test_2d.R:27:3' [ FAIL 0 | WARN 10 | SKIP 2 | PASS 40 ] > > #devtools::test("~/rglab/workspace/flowClust") > > #taking quite some time , thus only for internal testing > #test_file("~/rglab/workspace/flowClust/tests/testthat/flowClust-gated-data.R") > #tools::checkDocFiles(dir = ".") > > proc.time() user system elapsed 322.419 7.261 212.242
flowClust.Rcheck/flowClust-Ex.timings
name | user | system | elapsed | |
box | 0.035 | 0.011 | 0.046 | |
flowClust | 1.259 | 0.038 | 1.308 | |
tmixFilter | 1.064 | 0.035 | 1.106 | |