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This page was generated on 2024-10-03 11:49 -0400 (Thu, 03 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4461
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4716
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4466
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4498
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4446
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4445
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 774/2266HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gDRimport 1.3.4  (landing page)
Arkadiusz Gladki
Snapshot Date: 2024-10-02 13:40 -0400 (Wed, 02 Oct 2024)
git_url: https://git.bioconductor.org/packages/gDRimport
git_branch: devel
git_last_commit: f8eb1d4
git_last_commit_date: 2024-09-19 04:56:53 -0400 (Thu, 19 Sep 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    ERROR  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

CHECK results for gDRimport on kunpeng2

To the developers/maintainers of the gDRimport package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gDRimport.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: gDRimport
Version: 1.3.4
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings gDRimport_1.3.4.tar.gz
StartedAt: 2024-10-03 05:19:09 -0000 (Thu, 03 Oct 2024)
EndedAt: 2024-10-03 05:23:01 -0000 (Thu, 03 Oct 2024)
EllapsedTime: 231.4 seconds
RetCode: 0
Status:   OK  
CheckDir: gDRimport.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:gDRimport.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings gDRimport_1.3.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/gDRimport.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘gDRimport/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘gDRimport’ version ‘1.3.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gDRimport’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
convert_MAE_to_PSet 9.565  0.245   9.829
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

gDRimport.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL gDRimport
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘gDRimport’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gDRimport)

Tests output

gDRimport.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(gDRimport)
> 
> test_check("gDRimport")
2024-10-03 05:22:33 Building assay index...
2024-10-03 05:22:33 Joining rowData to assayIndex...
2024-10-03 05:22:34 Joining colData to assayIndex...
2024-10-03 05:22:35 Joining assays to assayIndex...
2024-10-03 05:22:37 Setting assayIndex key...
2024-10-03 05:22:37 Building LongTable...
2024-10-03 05:22:39 Building assay index...
2024-10-03 05:22:39 Joining rowData to assayIndex...
2024-10-03 05:22:40 Joining colData to assayIndex...
2024-10-03 05:22:40 Joining assays to assayIndex...
2024-10-03 05:22:42 Setting assayIndex key...
2024-10-03 05:22:43 Building LongTable...
INFO [2024-10-03 05:22:44] Manifest loaded successfully
INFO [2024-10-03 05:22:44] Manifest loaded successfully
INFO [2024-10-03 05:22:44] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:44] Plate 201904190a read; 384 wells
INFO [2024-10-03 05:22:44] Plate 201904190b read; 384 wells
INFO [2024-10-03 05:22:44] Plate 201904190c read; 384 wells
INFO [2024-10-03 05:22:44] Plate 201904190d read; 384 wells
INFO [2024-10-03 05:22:44] Plate 201904190e read; 384 wells
INFO [2024-10-03 05:22:44] Plate 201904190f read; 384 wells
INFO [2024-10-03 05:22:44] File done
INFO [2024-10-03 05:22:44] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:45] Plate 201904197a read; 384 wells
INFO [2024-10-03 05:22:45] Plate 201904197b read; 384 wells
INFO [2024-10-03 05:22:45] Plate 201904197c read; 384 wells
INFO [2024-10-03 05:22:45] Plate 201904197d read; 384 wells
INFO [2024-10-03 05:22:45] Plate 201904197e read; 384 wells
INFO [2024-10-03 05:22:45] Plate 201904197f read; 384 wells
INFO [2024-10-03 05:22:45] File done
INFO [2024-10-03 05:22:45] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:46] Plate 201904190a read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904190b read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904190c read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904190d read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904190e read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904190f read; 384 wells
INFO [2024-10-03 05:22:46] File done
INFO [2024-10-03 05:22:46] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:46] Plate 201904197a read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904197b read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904197c read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904197d read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904197e read; 384 wells
INFO [2024-10-03 05:22:46] Plate 201904197f read; 384 wells
INFO [2024-10-03 05:22:46] File done
INFO [2024-10-03 05:22:46] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:47] Plate 201904190a read; 384 wells
INFO [2024-10-03 05:22:47] Plate 201904190b read; 384 wells
INFO [2024-10-03 05:22:47] Plate 201904190c read; 384 wells
INFO [2024-10-03 05:22:47] Plate 201904190d read; 384 wells
INFO [2024-10-03 05:22:47] Plate 201904190e read; 384 wells
INFO [2024-10-03 05:22:47] Plate 201904190f read; 384 wells
INFO [2024-10-03 05:22:47] File done
INFO [2024-10-03 05:22:47] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-10-03 05:22:47] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-10-03 05:22:47] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-10-03 05:22:47] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-10-03 05:22:48] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:48] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:48] Loading Template_Untreated.xlsx
INFO [2024-10-03 05:22:48] Templates loaded successfully!
INFO [2024-10-03 05:22:48] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:48] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:48] Loading Template_Untreated.xlsx
INFO [2024-10-03 05:22:48] Templates loaded successfully!
INFO [2024-10-03 05:22:48] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:48] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-10-03 05:22:48] Templates loaded successfully!
INFO [2024-10-03 05:22:48] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:48] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:48] Templates loaded successfully!
INFO [2024-10-03 05:22:49] Manifest loaded successfully
INFO [2024-10-03 05:22:49] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:49] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:49] Loading Template_Untreated.xlsx
INFO [2024-10-03 05:22:49] Templates loaded successfully!
INFO [2024-10-03 05:22:49] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day0.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:49] Plate 201904190a read; 384 wells
INFO [2024-10-03 05:22:49] Plate 201904190b read; 384 wells
INFO [2024-10-03 05:22:49] Plate 201904190c read; 384 wells
INFO [2024-10-03 05:22:49] Plate 201904190d read; 384 wells
INFO [2024-10-03 05:22:49] Plate 201904190e read; 384 wells
INFO [2024-10-03 05:22:49] Plate 201904190f read; 384 wells
INFO [2024-10-03 05:22:49] File done
INFO [2024-10-03 05:22:49] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data1/RawData_day7.xlsx, sheet Readout_0077vs0068_day7
INFO [2024-10-03 05:22:50] Plate 201904197a read; 384 wells
INFO [2024-10-03 05:22:50] Plate 201904197b read; 384 wells
INFO [2024-10-03 05:22:50] Plate 201904197c read; 384 wells
INFO [2024-10-03 05:22:50] Plate 201904197d read; 384 wells
INFO [2024-10-03 05:22:50] Plate 201904197e read; 384 wells
INFO [2024-10-03 05:22:50] Plate 201904197f read; 384 wells
INFO [2024-10-03 05:22:50] File done
INFO [2024-10-03 05:22:50] Manifest loaded successfully
INFO [2024-10-03 05:22:50] Reading D300_trt_Tecan_96_well_plates.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:50] Loading D300_trt_Tecan_96_well_plates.xlsx
INFO [2024-10-03 05:22:50] Templates loaded successfully!
INFO [2024-10-03 05:22:50] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-2
INFO [2024-10-03 05:22:50] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-2
INFO [2024-10-03 05:22:50] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H358-1
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data2/RawData_Tecan_96_well_plates.xlsx, sheet H2122-1
INFO [2024-10-03 05:22:51] Manifest loaded successfully
INFO [2024-10-03 05:22:51] Reading Project40.treated.template.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:51] Loading Project40.treated.template.xlsx
INFO [2024-10-03 05:22:51] Loading Project40.untreated.template.xlsx
INFO [2024-10-03 05:22:51] Templates loaded successfully!
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0109269D00.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0109269D00 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0109269D01.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0109269D01 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0309269D00.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0309269D00 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0309269D01.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0309269D01 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0409269D00.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0409269D00 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0409269D01.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0409269D01 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0509269D00.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0509269D00 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0509269D01.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0509269D01 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0609269D00.csv, sheet 0
INFO [2024-10-03 05:22:51] Plate H0609269D00 read; 384 wells
INFO [2024-10-03 05:22:51] File done
INFO [2024-10-03 05:22:51] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0609269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0609269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0709269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0709269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0709269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0709269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0809269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0809269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0809269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0809269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0909269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0909269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H0909269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H0909269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1109269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1109269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1109269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1109269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1209269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1209269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1209269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1209269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1409269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1409269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/H1409269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate H1409269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0209269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K0209269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0209269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K0209269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0809269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K0809269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K0809269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K0809269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K1009269D00.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K1009269D00 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data4/K1009269D01.csv, sheet 0
INFO [2024-10-03 05:22:52] Plate K1009269D01 read; 384 wells
INFO [2024-10-03 05:22:52] File done
INFO [2024-10-03 05:22:52] Manifest loaded successfully
INFO [2024-10-03 05:22:52] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:52] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:52] Loading Template_Untreated.xlsx
INFO [2024-10-03 05:22:52] Templates loaded successfully!
INFO [2024-10-03 05:22:52] Manifest loaded successfully
INFO [2024-10-03 05:22:53] Reading Template_7daytreated.xlsx with load_templates_xlsx
INFO [2024-10-03 05:22:53] Loading Template_7daytreated.xlsx
INFO [2024-10-03 05:22:53] Loading Template_Untreated.xlsx
INFO [2024-10-03 05:22:53] Templates loaded successfully!
INFO [2024-10-03 05:22:53] Manifest loaded successfully
INFO [2024-10-03 05:22:53] Reading Template_trt.tsv with load_templates_tsv
INFO [2024-10-03 05:22:53] Loading Template_trt.tsv
INFO [2024-10-03 05:22:53] Loading Template_untrt.tsv
INFO [2024-10-03 05:22:53] Templates loaded successfully!
INFO [2024-10-03 05:22:53] Reading file /home/biocbuild/R/R-4.4.1/site-library/gDRimport/extdata/data5/RawData.tsv
WARN [2024-10-03 05:22:55] Metadata field names for  cannot contain spaces --> corrected to: Gnumber
WARN [2024-10-03 05:22:55] Header Gnumber in  corrected to Gnumber
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 141 ]
> 
> 
> proc.time()
   user  system elapsed 
 57.807   2.124  60.394

Example timings

gDRimport.Rcheck/gDRimport-Ex.timings

nameusersystemelapsed
check_metadata_names0.0720.0080.080
convert_LEVEL5_prism_to_gDR_input0.0170.0000.017
convert_LEVEL6_prism_to_gDR_input0.0120.0040.019
convert_MAE_to_PSet9.5650.2459.829
convert_pset_to_df0.1670.0120.177
detect_file_format0.3550.0080.367
getPSet0.1490.0000.149
get_exception_data0.0040.0040.007
get_test_D300_data0.0020.0000.001
get_test_EnVision_data0.0020.0000.002
get_test_Tecan_data0.0010.0000.001
get_test_data0.0030.0000.003
get_test_tsv_data0.0010.0000.001
import_D3003.4960.1003.611
is_readable_v0.0020.0000.001
load_data1.7860.0201.808
load_manifest0.0560.0000.055
load_results1.2850.0161.303
load_templates0.2550.0120.266
manifest_path-method0.0000.0020.003
parse_D300_xml1.6050.0171.625
read_excel_to_dt0.0210.0000.027
result_path-method0.0030.0000.002
setEnvForPSet0.0010.0000.000
standardize_record_values000
template_path-method0.0020.0000.002