J. Toedling
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/girafe |
| git_branch: devel |
| git_last_commit: 65a2882 |
| git_last_commit_date: 2024-04-30 10:21:35 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-06-11 15:40 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 849/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| girafe 1.57.0 (landing page) J. Toedling
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the girafe package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/girafe.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: girafe |
| Version: 1.57.0 |
| Command: rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=girafe.buildbin-libdir girafe_1.57.0.tar.gz |
| StartedAt: 2024-06-10 13:46:46 -0400 (Mon, 10 Jun 2024) |
| EndedAt: 2024-06-10 13:48:33 -0400 (Mon, 10 Jun 2024) |
| EllapsedTime: 107.6 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: girafe_1.57.0.zip |
| PackageFileSize: 2.051 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=girafe.buildbin-libdir girafe_1.57.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'girafe' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' using C++ compiler: 'G__~1.EXE (GCC) 13.2.0' g++ -std=gnu++17 -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c coverage.cpp -o coverage.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c girafe_init.c -o girafe_init.o g++ -std=gnu++17 -shared -s -static-libgcc -o girafe.dll tmp.def coverage.o girafe_init.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/girafe.buildbin-libdir/00LOCK-girafe/00new/girafe/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' Creating a generic function for 'sample' from package 'base' in package 'girafe' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' ** testing if installed package can be loaded from final location No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'girafe' as girafe_1.57.0.zip * DONE (girafe)