Kevin Rue-Albrecht
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/iSEE |
| git_branch: devel |
| git_last_commit: 8f32b92 |
| git_last_commit_date: 2024-06-01 17:22:43 -0400 (Sat, 01 Jun 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-06-11 15:42 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4679 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" | 4414 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4441 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 Patched (2024-04-24 r86482) -- "Puppy Cup" | 4394 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1031/2239 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iSEE 2.17.1 (landing page) Kevin Rue-Albrecht
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the iSEE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iSEE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: iSEE |
| Version: 2.17.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iSEE |
| StartedAt: 2024-06-09 19:48:50 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 19:51:12 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 142.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data iSEE ### ############################################################################## ############################################################################## * checking for file ‘iSEE/DESCRIPTION’ ... OK * preparing ‘iSEE’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘basic.Rmd’ using rmarkdown Quitting from lines 93-96 [allen-dataset] (basic.Rmd) Error: processing vignette 'basic.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz' --- failed re-building ‘basic.Rmd’ --- re-building ‘bigdata.Rmd’ using rmarkdown Quitting from lines 81-84 [unnamed-chunk-3] (bigdata.Rmd) Error: processing vignette 'bigdata.Rmd' failed with diagnostics: failed to open file at '~/Library/Caches/gypsum/bucket/scRNAseq/legacy/2023-12-18/allen/other_data/list_contents.json.gz' --- failed re-building ‘bigdata.Rmd’ --- re-building ‘configure.Rmd’ using rmarkdown Quitting from lines 44-55 [setup] (configure.Rmd) Error: processing vignette 'configure.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘configure.Rmd’ --- re-building ‘custom.Rmd’ using rmarkdown Quitting from lines 45-56 [setup] (custom.Rmd) Error: processing vignette 'custom.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘custom.Rmd’ --- re-building ‘ecm.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (ecm.Rmd) Error: processing vignette 'ecm.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘ecm.Rmd’ --- re-building ‘links.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (links.Rmd) Error: processing vignette 'links.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘links.Rmd’ --- re-building ‘voice.Rmd’ using rmarkdown Quitting from lines 43-54 [setup] (voice.Rmd) Error: processing vignette 'voice.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘voice.Rmd’ SUMMARY: processing the following files failed: ‘basic.Rmd’ ‘bigdata.Rmd’ ‘configure.Rmd’ ‘custom.Rmd’ ‘ecm.Rmd’ ‘links.Rmd’ ‘voice.Rmd’ Error: Vignette re-building failed. Execution halted