Davide Risso
| Snapshot Date: 2024-07-15 14:00 -0400 (Mon, 15 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/mbkmeans |
| git_branch: devel |
| git_last_commit: 8980ffa |
| git_last_commit_date: 2024-04-30 11:13:46 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-16 11:40 -0400 (Tue, 16 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1149/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.21.0 (landing page) Davide Risso
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
|
To the developers/maintainers of the mbkmeans package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mbkmeans |
| Version: 1.21.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL mbkmeans |
| StartedAt: 2024-07-15 15:44:13 -0400 (Mon, 15 Jul 2024) |
| EndedAt: 2024-07-15 15:45:11 -0400 (Mon, 15 Jul 2024) |
| EllapsedTime: 58.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL mbkmeans
###
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
using C++11
g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include' -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo:26,
from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:58,
from C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
from mini_batch.cpp:2:
C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:353:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
353 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:358:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
358 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
C:/Users/biocbuild/bbs-3.20-bioc/R/library/RcppArmadillo/include/armadillo_bits/config.hpp:361:61: note: '#pragma message: INFO: see the documentation for details'
361 | #pragma message ("INFO: see the documentation for details")
| ^
In file included from mini_batch.cpp:3:
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:862:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
862 | bool status;
| ^~~~~~
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_full<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1592:65: required from here
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
1530 | bool status;
| ^~~~~~
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h: In instantiation of 'T clustR::ClustHeader::GMM_arma_covariance_type(T, arma::mat&, int, std::string, std::string, int, int, bool, double, int) [with T = arma::gmm_priv::gmm_diag<double>; arma::mat = arma::Mat<double>; std::string = std::__cxx11::basic_string<char>]':
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1626:65: required from here
C:/Users/biocbuild/bbs-3.20-bioc/R/library/ClusterR/include/ClusterRHeader.h:1530:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-mbkmeans/00new/mbkmeans/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mbkmeans)