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This page was generated on 2024-10-28 11:49 -0400 (Mon, 28 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4501
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4761
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4504
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4535
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4483
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1286/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mitch 1.17.4  (landing page)
Mark Ziemann
Snapshot Date: 2024-10-27 02:55 -0400 (Sun, 27 Oct 2024)
git_url: https://git.bioconductor.org/packages/mitch
git_branch: devel
git_last_commit: e7db288
git_last_commit_date: 2024-10-23 22:03:07 -0400 (Wed, 23 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for mitch on kjohnson3

To the developers/maintainers of the mitch package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mitch.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mitch
Version: 1.17.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch
StartedAt: 2024-10-27 06:58:48 -0400 (Sun, 27 Oct 2024)
EndedAt: 2024-10-27 07:02:17 -0400 (Sun, 27 Oct 2024)
EllapsedTime: 209.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data mitch
###
##############################################################################
##############################################################################


* checking for file ‘mitch/DESCRIPTION’ ... OK
* preparing ‘mitch’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘infiniumMethArrayWorkflow.Rmd’ using rmarkdown
2024-10-27 07:01:59.617 R[13408:35689067] XType: Using static font registry.
--- finished re-building ‘infiniumMethArrayWorkflow.Rmd’

--- re-building ‘mitchWorkflow.Rmd’ using rmarkdown
trying URL 'https://reactome.org/download/current/ReactomePathways.gmt.zip'
Content type 'application/zip' length 276644 bytes (270 KB)
==================================================
downloaded 270 KB


Quitting from lines 207-208 [plots] (mitchWorkflow.Rmd)
Error: processing vignette 'mitchWorkflow.Rmd' failed with diagnostics:
non-numeric argument to binary operator
--- failed re-building ‘mitchWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘mitchWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted