Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-08-27 11:47 -0400 (Tue, 27 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4421
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4415
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1281/2255HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.1.1  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2024-08-26 14:00 -0400 (Mon, 26 Aug 2024)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: devel
git_last_commit: 04e2774
git_last_commit_date: 2024-05-08 12:02:49 -0400 (Wed, 08 May 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for mobileRNA on kunpeng2

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: mobileRNA
Version: 1.1.1
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.1.1.tar.gz
StartedAt: 2024-08-27 06:52:38 -0000 (Tue, 27 Aug 2024)
EndedAt: 2024-08-27 06:59:13 -0000 (Tue, 27 Aug 2024)
EllapsedTime: 394.7 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings mobileRNA_1.1.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/mobileRNA.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.1.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         18.407  0.203  18.640
RNAdicercall            17.143  0.415  17.594
RNAsubset               16.608  0.128  16.767
RNAdifferentialAnalysis 10.508  0.212  10.736
RNAsummary               7.288  0.052   7.352
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL mobileRNA
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘mobileRNA’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.6070.1681.779
RNAdf2se0.2980.0040.303
RNAdicercall17.143 0.41517.594
RNAdifferentialAnalysis10.508 0.21210.736
RNAdistribution18.407 0.20318.640
RNAfeatures1.7370.0351.777
RNAimport0.0000.0000.001
RNAmergeAnnotations0.4190.0080.429
RNAmergeGenomes0.0720.0000.074
RNAmobile2.0120.0762.091
RNApopulation3.2020.0083.215
RNAreorder0.1580.0080.166
RNAsequences2.1710.0002.174
RNAsubset16.608 0.12816.767
RNAsummary7.2880.0527.352
mRNA_data0.0350.0040.039
mapRNA000
plotHeatmap0.9950.0000.996
plotRNAfeatures1.5510.0121.566
plotSampleDistance3.1180.0523.175
plotSamplePCA3.8250.0403.871
sRNA_data0.1750.0000.175