Multiple platform build/check report for BioC 3.20 - BUILD results for pRoloc on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4461
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4716
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4466
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4498
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4446
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4445
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for pRoloc on lconway

To the developers/maintainers of the pRoloc package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pRoloc.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: pRoloc

Version: 1.45.1

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc

StartedAt: 2024-10-02 17:51:38 -0400 (Wed, 02 Oct 2024)

EndedAt: 2024-10-02 17:55:46 -0400 (Wed, 02 Oct 2024)

EllapsedTime: 248.8 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pRoloc
###
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* checking for file ‘pRoloc/DESCRIPTION’ ... OK
* preparing ‘pRoloc’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-pRoloc-tutorial.Rmd’ using rmarkdown

Quitting from lines 242-248 [readCsvData0] (v01-pRoloc-tutorial.Rmd)
Error: processing vignette 'v01-pRoloc-tutorial.Rmd' failed with diagnostics:
invalid 'description' argument
--- failed re-building ‘v01-pRoloc-tutorial.Rmd’

--- re-building ‘v02-pRoloc-ml.Rmd’ using rmarkdown
--- finished re-building ‘v02-pRoloc-ml.Rmd’

--- re-building ‘v03-pRoloc-bayesian.Rmd’ using rmarkdown
--- finished re-building ‘v03-pRoloc-bayesian.Rmd’

--- re-building ‘v04-pRoloc-goannotations.Rmd’ using rmarkdown
2024-10-02 17:55:24.165 R[25524:11868617] XType: com.apple.fonts is not accessible.
2024-10-02 17:55:24.165 R[25524:11868617] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘v04-pRoloc-goannotations.Rmd’

--- re-building ‘v05-pRoloc-transfer-learning.Rmd’ using rmarkdown

Quitting from lines 316-319 [tabdelim] (v05-pRoloc-transfer-learning.Rmd)
Error: processing vignette 'v05-pRoloc-transfer-learning.Rmd' failed with diagnostics:
no lines available in input
--- failed re-building ‘v05-pRoloc-transfer-learning.Rmd’

SUMMARY: processing the following files failed:
  ‘v01-pRoloc-tutorial.Rmd’ ‘v05-pRoloc-transfer-learning.Rmd’

Error: Vignette re-building failed.
Execution halted