Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-27 11:45 -0400 (Tue, 27 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4415 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1602/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
qckitfastq 1.21.0 (landing page) August Guang
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the qckitfastq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qckitfastq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: qckitfastq |
Version: 1.21.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qckitfastq |
StartedAt: 2024-08-26 15:08:32 -0400 (Mon, 26 Aug 2024) |
EndedAt: 2024-08-26 15:08:38 -0400 (Mon, 26 Aug 2024) |
EllapsedTime: 5.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL qckitfastq ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘qckitfastq’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’ using C++14 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c calc_adapter_content.cpp -o calc_adapter_content.o In file included from calc_adapter_content.cpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/find.h:44: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/modifier.h:48: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/parallel.h:92: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/parallel/parallel_resource_pool.h:69:18: warning: variable 'count' set but not used [-Wunused-but-set-variable] unsigned count = 0; ^ In file included from calc_adapter_content.cpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/find.h:45: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/score.h:48: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/score/score_matrix_io.h:125:19: warning: variable 'row' set but not used [-Wunused-but-set-variable] for (unsigned row = 0; !atEnd(reader); ++row) ^ In file included from calc_adapter_content.cpp:7: In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/find.h:73: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include/seqan/find/find_wild_shiftand.h:160:11: warning: variable 'len' set but not used [-Wunused-but-set-variable] TWord len = nl; ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gzstream.cpp -o gzstream.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RSeqAn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c read_fastq.cpp -o read_fastq.o read_fastq.cpp:30:32: warning: unused variable 'it' [-Wunused-variable] std::vector<int>::iterator it; ^ read_fastq.cpp:158:36: warning: unused variable 'qual_by_col_it' [-Wunused-variable] std::vector<uint8_t>::iterator qual_by_col_it; ^ 2 warnings generated. clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qckitfastq.so RcppExports.o calc_adapter_content.o gzstream.o read_fastq.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-qckitfastq/00new/qckitfastq/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qckitfastq)