##############################################################################
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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:rhdf5filters.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings rhdf5filters_1.17.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'rhdf5filters/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rhdf5filters' version '1.17.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rhdf5filters' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    lib   6.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.20-bioc/R/library/rhdf5filters/libs/x64/rhdf5filters.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'tinytest.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL rhdf5filters
###
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* installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'rhdf5filters' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
make -C zstd
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/zstd'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
rm -f libzstd.a
ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o
ranlib libzstd.a
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zzstd.c -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" \
-I. -Icommon libzstd.a  -o libH5Zzstd.so
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/zstd'
make -C blosc
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc'
make -C lib/snappy-1.1.1
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/snappy-1.1.1'
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -c snappy.cc
snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::Append(const char*, size_t)':
snappy.cc:1013:33: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare]
 1013 |         if (curr_iov_index_ + 1 >= output_iov_count_) {
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
snappy.cc: In member function 'bool snappy::SnappyIOVecWriter::AppendFromSelf(size_t, size_t)':
snappy.cc:1095:35: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare]
 1095 |           if (curr_iov_index_ + 1 >= output_iov_count_) {
      |               ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
snappy.cc: At global scope:
snappy.cc:567:13: warning: 'void snappy::ComputeTable()' defined but not used [-Wunused-function]
  567 | static void ComputeTable() {
      |             ^~~~~~~~~~~~
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -c snappy-c.cc
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -c snappy-sinksource.cc
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -c snappy-stubs-internal.cc
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/snappy-1.1.1'
make -C lib/lz4-1.9.4
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/lz4-1.9.4'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lz4.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lz4hc.c
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/lz4-1.9.4'
make -C lib/blosc-1.20.1 all
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/blosc-1.20.1'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c bitshuffle-generic.c
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder':
bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   40 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal':
bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   48 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder':
bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   85 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem':
bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  109 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight':
bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  121 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal':
bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  139 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal':
bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  204 | }
      | ^
bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal':
bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  220 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c shuffle-generic.c
shuffle-generic.c: In function 'blosc_internal_shuffle_generic':
shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   17 | }
      | ^
shuffle-generic.c: In function 'blosc_internal_unshuffle_generic':
shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
   25 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd     -c shuffle.c
shuffle.c: In function 'get_shuffle_implementation':
shuffle.c:316:22: warning: unused variable 'cpu_features' [-Wunused-variable]
  316 |   blosc_cpu_features cpu_features = blosc_get_cpu_features();
      |                      ^~~~~~~~~~~~
In file included from shuffle.c:12:
shuffle-generic.h: At top level:
shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function]
   61 | static void unshuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function]
   32 | static void shuffle_generic_inline(const size_t type_size,
      |             ^~~~~~~~~~~~~~~~~~~~~~
shuffle.c: In function 'blosc_internal_shuffle':
shuffle.c:390:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  390 | }
      | ^
shuffle.c: In function 'blosc_internal_unshuffle':
shuffle.c:403:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  403 | }
      | ^
shuffle.c: In function 'blosc_internal_bitshuffle':
shuffle.c:430:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  430 | }
      | ^
shuffle.c: In function 'blosc_internal_bitunshuffle':
shuffle.c:457:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes]
  457 | }
      | ^
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosclz.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c blosc.c
blosc.c:151:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable]
  151 | static int32_t g_atfork_registered = 0;
      |                ^~~~~~~~~~~~~~~~~~~
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../lz4-1.9.4 -I../snappy-1.1.1 -I../../../zstd   -c fastcopy.c
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc/lib/blosc-1.20.1'
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.4/lz4.o lib/lz4-1.9.4/lz4hc.o 
ranlib libblosc.a
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" H5Zblosc.cpp \
 -I./lib/blosc-1.20.1 ./libblosc.a ../zstd/libzstd.a -lz -o libH5Zblosc.so 
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/blosc'
make -C bzip2
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/bzip2'
make -C bzip2-1.0.8
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/bzip2/bzip2-1.0.8'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c blocksort.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c huffman.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c crctable.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c randtable.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c compress.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c decompress.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -D_FILE_OFFSET_BITS=64 -c bzlib.c
rm -f libbz2.a
ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/bzip2/bzip2-1.0.8'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zbzip2.c -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" \
-Ibzip2-1.0.8 bzip2-1.0.8/libbz2.a  -o libH5Zbz2.so
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/bzip2'
make -C lzf
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/lzf'
make -C lzf
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/lzf/lzf'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lzf_c.c
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -c lzf_d.c
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
ranlib liblzf.a
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/lzf/lzf'
gcc  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -shared H5Zlzf.c -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" \
-I./lzf/ ./lzf/liblzf.a  -o libH5Zlzf.so
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/lzf'
make -C vbz
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz'
make -C third_party/streamvbyte
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz/third_party/streamvbyte'
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_decode.c
In file included from ./src/streamvbyte_decode.c:25:
./src/streamvbyte_shuffle_tables_decode.h:22:16: warning: 'shuffleTable' defined but not used [-Wunused-variable]
   22 | static uint8_t shuffleTable[256][16] = {
      |                ^~~~~~~~~~~~
./src/streamvbyte_shuffle_tables_decode.h:2:16: warning: 'lengthTable' defined but not used [-Wunused-variable]
    2 | static uint8_t lengthTable[256] ={
      |                ^~~~~~~~~~~
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_encode.c
In file included from ./src/streamvbyte_encode.c:25:
./src/streamvbyte_shuffle_tables_encode.h:93:16: warning: 'encodingShuffleTable' defined but not used [-Wunused-variable]
   93 | static uint8_t encodingShuffleTable[256][16] = {
      |                ^~~~~~~~~~~~~~~~~~~~
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbytedelta_decode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbytedelta_encode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_0124_encode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_0124_decode.c
gcc  -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -Iinclude -c ./src/streamvbyte_zigzag.c
rm -f libstreamvbyte.a
ar cq libstreamvbyte.a streamvbyte_decode.o streamvbyte_encode.o streamvbytedelta_decode.o streamvbytedelta_encode.o streamvbyte_0124_encode.o  streamvbyte_0124_decode.o streamvbyte_zigzag.o
ranlib libstreamvbyte.a 
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz/third_party/streamvbyte'
make -C vbz
make[2]: Entering directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz/vbz'
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c vbz.cpp -o vbz.o
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v0/vbz_streamvbyte.cpp -o v0/vbz_streamvbyte.o
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I../third_party/streamvbyte/include/ -I../third_party/ -I../../zstd/ -mssse3 -c v1/vbz_streamvbyte.cpp -o v1/vbz_streamvbyte.o
make[2]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz/vbz'
rm -f libvbz.a
ar cq libvbz.a vbz/vbz.o vbz/v0/vbz_streamvbyte.o vbz/v1/vbz_streamvbyte.o
ranlib libvbz.a
g++ -std=gnu++17  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign  -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -shared vbz_plugin.cpp \
libvbz.a  ../zstd/libzstd.a third_party/streamvbyte/libstreamvbyte.a -o libH5Zvbz.so
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.20-bioc/meat/rhdf5filters/src/vbz'
mkdir -p "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64/"
cp blosc/libH5Zblosc.so "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zblosc.dll"
cp bzip2/libH5Zbz2.so "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zbz2.dll"
cp lzf/libH5Zlzf.so "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zlzf.dll"
cp vbz/libH5Zvbz.so "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zvbz.dll"
cp zstd/libH5Zzstd.so "C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/x64//libH5Zzstd.dll"
gcc  -I"C:/Users/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -lpthread -I"C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include" -I'C:/Users/biocbuild/bbs-3.20-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"  -O2 -Wall -mfpmath=sse -msse2 -mstackrealign   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c rhdf5filters.c -o rhdf5filters.o
gcc -shared -s -static-libgcc -o rhdf5filters.dll tmp.def rhdf5filters.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LC:/Users/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.20-bioc/R/library/00LOCK-rhdf5filters/00new/rhdf5filters/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5filters)

R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> if (requireNamespace("tinytest", quietly = TRUE)) {
+   tinytest::test_package("rhdf5filters")
+ }

test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............    0 tests    
test-filter-io.R..............  252 tests OK 
test-filter-io.R..............  306 tests OK 
test-filter-io.R..............  312 tests OK 5.2s

test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    0 tests    
test-filter-read.R............    2 tests OK 30ms

test-plugin-path.R............    0 tests    
test-plugin-path.R............    1 tests OK 
test-plugin-path.R............    2 tests OK 
test-plugin-path.R............    3 tests OK 4ms
All ok, 317 results (5.2s)
> 
> proc.time()
   user  system elapsed 
   1.87    0.54    5.43