Koki Tsuyuzaki
| Snapshot Date: 2024-07-22 14:00 -0400 (Mon, 22 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/scTensor |
| git_branch: devel |
| git_last_commit: 29f39d9 |
| git_last_commit_date: 2024-04-30 11:11:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-23 11:41 -0400 (Tue, 23 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4688 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4280 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4455 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4404 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1877/2248 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scTensor 2.15.0 (landing page) Koki Tsuyuzaki
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the scTensor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTensor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: scTensor |
| Version: 2.15.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor |
| StartedAt: 2024-07-22 18:18:12 -0400 (Mon, 22 Jul 2024) |
| EndedAt: 2024-07-22 18:20:44 -0400 (Mon, 22 Jul 2024) |
| EllapsedTime: 151.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scTensor ### ############################################################################## ############################################################################## * checking for file ‘scTensor/DESCRIPTION’ ... OK * preparing ‘scTensor’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘scTensor.Rmd’ using rmarkdown 2024-07-22 18:20:07.897 R[33004:437258765] XType: com.apple.fonts is not accessible. 2024-07-22 18:20:07.897 R[33004:437258765] XType: XTFontStaticRegistry is enabled. Warning: The label(s) fig:cellCellSetting not found --- finished re-building ‘scTensor.Rmd’ --- re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ using rmarkdown Quitting from lines 152-164 [Ensembl with AnnotationHub] (scTensor_1_Data_format_ID_Conversion.Rmd) Error: processing vignette 'scTensor_1_Data_format_ID_Conversion.Rmd' failed with diagnostics: failed to load resource name: AH116710 title: org.Hs.eg.db.sqlite reason: invalid names for slots of class "EnsDb": conn, packageName --- failed re-building ‘scTensor_1_Data_format_ID_Conversion.Rmd’ --- re-building ‘scTensor_2_Report_Interpretation.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection --- finished re-building ‘scTensor_2_Report_Interpretation.Rmd’ --- re-building ‘scTensor_3_CCI_Simulation.Rmd’ using rmarkdown --- finished re-building ‘scTensor_3_CCI_Simulation.Rmd’ --- re-building ‘scTensor_4_Reanalysis.Rmd’ using rmarkdown --- finished re-building ‘scTensor_4_Reanalysis.Rmd’ SUMMARY: processing the following file failed: ‘scTensor_1_Data_format_ID_Conversion.Rmd’ Error: Vignette re-building failed. Execution halted