Back to Multiple platform build/check report for BioC 3.20:   simplified   long
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This page was generated on 2024-11-05 12:09 -0500 (Tue, 05 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4503
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4763
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4539
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4493
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2088/2289HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.44.0  (landing page)
Hai Fang
Snapshot Date: 2024-11-04 13:40 -0500 (Mon, 04 Nov 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: RELEASE_3_20
git_last_commit: fa3ac85
git_last_commit_date: 2024-10-29 09:47:31 -0500 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for supraHex on kunpeng2

To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: supraHex
Version: 1.44.0
Command: /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz
StartedAt: 2024-11-05 12:59:06 -0000 (Tue, 05 Nov 2024)
EndedAt: 2024-11-05 13:00:21 -0000 (Tue, 05 Nov 2024)
EllapsedTime: 75.1 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings supraHex_1.44.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/supraHex.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.44.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
visCompReorder 5.406  0.091   5.128
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0750.0120.087
sCompReorder3.4850.0443.540
sDistance0.3660.0040.372
sDmat0.4020.0000.404
sDmatCluster0.5470.0000.549
sDmatMinima0.4020.0040.406
sHexDist0.0090.0000.009
sHexGrid0.0020.0000.002
sHexGridVariant0.0020.0000.002
sHexPolygon0.1130.0000.113
sInitial0.0090.0000.008
sMapOverlay0.4720.0080.486
sNeighAny0.0120.0000.012
sNeighDirect0.010.000.01
sPipeline0.0000.0000.001
sTopology0.0540.0040.058
sTrainBatch0.0530.0000.053
sTrainSeq0.5140.0200.535
sTrainology0.0090.0000.010
sWriteData0.9880.0221.004
visColoralpha0.0040.0000.004
visColorbar0.0280.0000.029
visColormap0.0040.0000.003
visCompReorder5.4060.0915.128
visDmatCluster000
visDmatHeatmap0.0010.0000.000
visHeatmap0.1140.0200.134
visHeatmapAdv0.4890.0120.503
visHexAnimate0.0010.0000.001
visHexBarplot1.3480.0441.027
visHexComp0.3720.0120.384
visHexGrid0.3570.0000.358
visHexMapping2.5840.0401.828
visHexMulComp1.7320.0401.371
visHexPattern2.2470.0241.906
visKernels0.0090.0040.014
visTreeBSclust0.0010.0000.001
visTreeBootstrap0.0000.0000.001
visVp0.0210.0000.021