Multiple platform build/check report for BioC 3.20 - BUILD results for variancePartition on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4703
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4440
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4472
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4421
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4415
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for variancePartition on kunpeng2

To the developers/maintainers of the variancePartition package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: variancePartition

Version: 1.35.4

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition

StartedAt: 2024-08-27 01:59:51 -0000 (Tue, 27 Aug 2024)

EndedAt: 2024-08-27 02:04:37 -0000 (Tue, 27 Aug 2024)

EllapsedTime: 286.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition
###
##############################################################################
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* checking for file ‘variancePartition/DESCRIPTION’ ... OK
* preparing ‘variancePartition’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: variancePartition
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘FAQ.Rmd’ using rmarkdown
--- finished re-building ‘FAQ.Rmd’

--- re-building ‘additional_visualization.Rmd’ using rmarkdown
--- finished re-building ‘additional_visualization.Rmd’

--- re-building ‘dream.Rmd’ using rmarkdown

Quitting from lines 114-133 [dupCor] (dream.Rmd)
Error: processing vignette 'dream.Rmd' failed with diagnostics:
C stack usage  7971120 is too close to the limit
--- failed re-building ‘dream.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘mvtests.Rmd’ using rmarkdown

Quitting from lines 79-95 [dream] (mvtests.Rmd)
Error: processing vignette 'mvtests.Rmd' failed with diagnostics:
C stack usage  7971120 is too close to the limit
--- failed re-building ‘mvtests.Rmd’

--- re-building ‘rnd_effects.Rmd’ using rmarkdown
--- finished re-building ‘rnd_effects.Rmd’

--- re-building ‘variancePartition.Rmd’ using rmarkdown
--- finished re-building ‘variancePartition.Rmd’

SUMMARY: processing the following files failed:
  ‘dream.Rmd’ ‘mvtests.Rmd’

Error: Vignette re-building failed.
Execution halted