Back to Build/check report for BioC 3.20 experimental data |
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This page was generated on 2024-08-22 14:51 -0400 (Thu, 22 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 147/425 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
GeuvadisTranscriptExpr 1.33.0 (landing page) Malgorzata Nowicka
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the GeuvadisTranscriptExpr package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: GeuvadisTranscriptExpr |
Version: 1.33.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GeuvadisTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GeuvadisTranscriptExpr_1.33.0.tar.gz |
StartedAt: 2024-08-22 11:42:49 -0400 (Thu, 22 Aug 2024) |
EndedAt: 2024-08-22 11:43:55 -0400 (Thu, 22 Aug 2024) |
EllapsedTime: 66.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GeuvadisTranscriptExpr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:GeuvadisTranscriptExpr.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings GeuvadisTranscriptExpr_1.33.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GeuvadisTranscriptExpr.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘GeuvadisTranscriptExpr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GeuvadisTranscriptExpr’ version ‘1.33.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GeuvadisTranscriptExpr’ can be installed ... OK * checking installed package size ... NOTE installed size is 112.3Mb sub-directories of 1Mb or more: extdata 112.0Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... NOTE Problems with news in ‘NEWS’: Cannot process chunk/lines: v0.1.1: - Adapted package for Bioconductor submission Cannot process chunk/lines: v0.99.0: - Bioconductor submission * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed counts 30.78 1.16 31.951 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.20-data-experiment/meat/GeuvadisTranscriptExpr.Rcheck/00check.log’ for details.
GeuvadisTranscriptExpr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL GeuvadisTranscriptExpr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘GeuvadisTranscriptExpr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeuvadisTranscriptExpr)
GeuvadisTranscriptExpr.Rcheck/GeuvadisTranscriptExpr-Ex.timings
name | user | system | elapsed | |
counts | 30.780 | 1.160 | 31.951 | |