| Back to Build/check report for BioC 3.20 experimental data |
|
This page was generated on 2025-04-01 15:41 -0400 (Tue, 01 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.3 (2025-02-28) -- "Trophy Case" | 4764 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 207/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| KEGGandMetacoreDzPathwaysGEO 1.26.0 (landing page) Gaurav Bhatti
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||
|
To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: KEGGandMetacoreDzPathwaysGEO |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.26.0.tar.gz |
| StartedAt: 2025-04-01 12:11:59 -0400 (Tue, 01 Apr 2025) |
| EndedAt: 2025-04-01 12:12:54 -0400 (Tue, 01 Apr 2025) |
| EllapsedTime: 54.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.26.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.4.3 (2025-02-28)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 98.7Mb
sub-directories of 1Mb or more:
data 98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.20-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.
KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGandMetacoreDzPathwaysGEO)
KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings
| name | user | system | elapsed | |
| GSE1145 | 0.308 | 0.014 | 0.322 | |
| GSE11906 | 2.925 | 0.052 | 2.977 | |
| GSE14924_CD4 | 0.221 | 0.020 | 0.242 | |
| GSE14924_CD8 | 0.235 | 0.008 | 0.243 | |
| GSE16759 | 0.316 | 0.003 | 0.319 | |
| GSE19420 | 0.201 | 0.017 | 0.218 | |
| GSE20164 | 0.068 | 0.001 | 0.069 | |
| GSE22780 | 0.203 | 0.012 | 0.215 | |
| GSE23878 | 0.744 | 0.031 | 0.775 | |
| GSE24739_G0 | 0.431 | 0.004 | 0.435 | |
| GSE24739_G1 | 0.435 | 0.005 | 0.439 | |
| GSE30153 | 0.544 | 0.008 | 0.552 | |
| GSE32676 | 0.706 | 0.016 | 0.722 | |
| GSE38666_epithelia | 0.306 | 0.011 | 0.316 | |
| GSE38666_stroma | 0.193 | 0.007 | 0.200 | |
| GSE4183 | 0.232 | 0.010 | 0.243 | |
| GSE42057 | 0.945 | 0.011 | 0.957 | |
| GSE7305 | 0.684 | 0.006 | 0.691 | |
| KEGGandMetacoreDzPathwaysGEO-package | 0.592 | 0.019 | 0.611 | |