Back to Build/check report for BioC 3.20 experimental data |
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This page was generated on 2024-10-31 19:08 -0400 (Thu, 31 Oct 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 141/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
frmaExampleData 1.42.0 (landing page) Matthew N. McCall
| nebbiolo2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
To the developers/maintainers of the frmaExampleData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: frmaExampleData |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings frmaExampleData_1.42.0.tar.gz |
StartedAt: 2024-10-31 14:08:17 -0400 (Thu, 31 Oct 2024) |
EndedAt: 2024-10-31 14:13:43 -0400 (Thu, 31 Oct 2024) |
EllapsedTime: 326.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: frmaExampleData.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:frmaExampleData.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings frmaExampleData_1.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-data-experiment/meat/frmaExampleData.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘frmaExampleData/DESCRIPTION’ ... OK * this is package ‘frmaExampleData’ version ‘1.42.0’ * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘frmaExampleData’ can be installed ... OK * checking installed package size ... NOTE installed size is 22.8Mb sub-directories of 1Mb or more: data 22.7Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... WARNING Error loading dataset 'AffyBatch133a': Error in .requirePackage(package) : unable to find required package 'affy' Error loading dataset 'AffyBatch133atag': Error in .requirePackage(package) : unable to find required package 'affy' Error loading dataset 'AffyBatch133plus2': Error in .requirePackage(package) : unable to find required package 'affy' Error loading dataset 'AffyBatchExample': Error in .requirePackage(package) : unable to find required package 'affy' The dataset(s) may use package(s) not declared in Depends/Imports. * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress AffyBatch133a.rda 10.8Mb 6.8Mb xz AffyBatch133atag.rda 2.2Mb 901Kb xz AffyBatch133plus2.rda 5.4Mb 1.8Mb xz AffyBatchExample.rda 4.3Mb 2.3Mb xz * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs, 2 NOTEs See ‘/home/biocbuild/bbs-3.20-data-experiment/meat/frmaExampleData.Rcheck/00check.log’ for details.
frmaExampleData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL frmaExampleData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘frmaExampleData’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frmaExampleData)
frmaExampleData.Rcheck/frmaExampleData-Ex.timings
name | user | system | elapsed | |
AffyBatch133a | 0.513 | 0.027 | 0.541 | |
AffyBatch133atag | 0.200 | 0.004 | 0.203 | |
AffyBatch133plus2 | 0.776 | 0.045 | 0.821 | |
AffyBatchExample | 0.225 | 0.011 | 0.236 | |