Back to Workflows build report for BioC 3.20

This page was generated on 2024-06-14 16:30 -0400 (Fri, 14 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 29/30HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.29.0  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2024-06-14 12:45 -0400 (Fri, 14 Jun 2024)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: devel
git_last_commit: b5c59fd
git_last_commit_date: 2024-04-30 10:13:44 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    NA  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK  


INSTALL results for TCGAWorkflow on palomino4

To the developers/maintainers of the TCGAWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TCGAWorkflow
Version: 1.29.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow
StartedAt: 2024-06-14 13:03:51 -0400 (Fri, 14 Jun 2024)
EndedAt: 2024-06-14 13:06:41 -0400 (Fri, 14 Jun 2024)
EllapsedTime: 170.0 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL TCGAWorkflow
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'TCGAWorkflow' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'biomaRt::select' by 'dplyr::select' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::intersect' by 'dplyr::intersect' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::union' by 'dplyr::union' when loading 'TCGAWorkflow'
Warning: replacing previous import 'GenomicRanges::setdiff' by 'dplyr::setdiff' when loading 'TCGAWorkflow'
Warning: replacing previous import 'SummarizedExperiment::as.data.frame' by 'motifStack::as.data.frame' when loading 'TCGAWorkflow'
** testing if installed package keeps a record of temporary installation path
* DONE (TCGAWorkflow)