Back to Workflows build report for BioC 3.20

This page was generated on 2024-06-28 16:30 -0400 (Fri, 28 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4693
palomino6Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4154
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4407
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 12/30HostnameOS / ArchINSTALLBUILD
fluentGenomics 1.17.0  (landing page)
Stuart Lee
Snapshot Date: 2024-06-28 12:45 -0400 (Fri, 28 Jun 2024)
git_url: https://git.bioconductor.org/packages/fluentGenomics
git_branch: devel
git_last_commit: 8950971
git_last_commit_date: 2024-04-30 10:14:08 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino6Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK  

BUILD results for fluentGenomics on palomino6

To the developers/maintainers of the fluentGenomics package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fluentGenomics
Version: 1.17.0
Command: chmod a+r fluentGenomics -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fluentGenomics
StartedAt: 2024-06-28 13:19:11 -0400 (Fri, 28 Jun 2024)
EndedAt: 2024-06-28 13:20:09 -0400 (Fri, 28 Jun 2024)
EllapsedTime: 57.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r fluentGenomics -R && C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fluentGenomics
###
##############################################################################
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* checking for file 'fluentGenomics/DESCRIPTION' ... OK
* preparing 'fluentGenomics':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'fluentGenomics.Rmd' using rmarkdown

Quitting from lines 191-195 [tximeta-run] (fluentGenomics.Rmd)
Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics:
Corrupt Cache: index file
  See AnnotationHub's TroubleshootingTheHubs vignette section on corrupt cache
  cache: C:\Users\biocbuild\AnnotationHub_cache
  filename: annotationhub.index.rds
--- failed re-building 'fluentGenomics.Rmd'

SUMMARY: processing the following file failed:
  'fluentGenomics.Rmd'

Error: Vignette re-building failed.
Execution halted