Catalina Vallejos
| Snapshot Date: 2025-08-07 13:40 -0400 (Thu, 07 Aug 2025) |
| git_url: https://git.bioconductor.org/packages/BASiCS |
| git_branch: RELEASE_3_21 |
| git_last_commit: 7ccf50a |
| git_last_commit_date: 2025-04-15 11:14:38 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-08-11 11:41 -0400 (Mon, 11 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4823 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4565 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4603 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4544 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 137/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BASiCS 2.20.0 (landing page) Catalina Vallejos
| nebbiolo1 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the BASiCS package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BASiCS.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BASiCS |
| Version: 2.20.0 |
| Command: rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=BASiCS.buildbin-libdir BASiCS_2.20.0.tar.gz |
| StartedAt: 2025-08-08 08:23:31 -0400 (Fri, 08 Aug 2025) |
| EndedAt: 2025-08-08 08:25:14 -0400 (Fri, 08 Aug 2025) |
| EllapsedTime: 103.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BASiCS_2.20.0.zip |
| PackageFileSize: 3.916 MiB |
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### Running command:
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### rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=BASiCS.buildbin-libdir BASiCS_2.20.0.tar.gz
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* installing *source* package 'BASiCS' ...
** this is package 'BASiCS' version '2.20.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
using C++11
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BASiCS.cpp -o BASiCS.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/include/R.h:73,
from libraries.h:6,
from utils.h:4,
from updates.h:4,
from BASiCS.cpp:1:
E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include/Rcpp/exceptions.h: In function 'void Rcpp::Rf_warning(const char*, Args&& ...) [with Args = {const char*}]':
E:/biocbuild/bbs-3.21-bioc/R/include/R_ext/Error.h:85:17: warning: infinite recursion detected [-Winfinite-recursion]
85 | #define warning Rf_warning
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include/Rcpp/exceptions.h:190:17: note: in expansion of macro 'warning'
190 | inline void warning(const char* fmt, Args&&... args ) {
| ^~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include/RcppCommon.h:133,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:29,
from libraries.h:11:
E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include/Rcpp/exceptions.h:191:19: note: recursive call
191 | Rf_warning("%s", tfm::format(fmt, std::forward<Args>(args)... ).c_str());
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppArmadillo/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o BASiCS.dll tmp.def BASiCS.o RcppExports.o -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRlapack -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lRblas -lgfortran -lquadmath -fopenmp -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/BASiCS.buildbin-libdir/00LOCK-BASiCS/00new/BASiCS/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BASiCS' as BASiCS_2.20.0.zip
* DONE (BASiCS)