Multiple platform build/check report for BioC 3.21 - BUILD results for MethReg on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for MethReg on nebbiolo1

To the developers/maintainers of the MethReg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MethReg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: MethReg

Version: 1.18.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg

StartedAt: 2025-08-10 17:59:21 -0400 (Sun, 10 Aug 2025)

EndedAt: 2025-08-10 18:00:39 -0400 (Sun, 10 Aug 2025)

EllapsedTime: 78.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MethReg
###
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* checking for file ‘MethReg/DESCRIPTION’ ... OK
* preparing ‘MethReg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MethReg.Rmd’ using rmarkdown

Quitting from MethReg.Rmd:196-199 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `MatrixGenerics:::.load_next_suggested_package_to_search()`:
! Failed to find a rowRanges() method for NULL objects.
---
Backtrace:
     ▆
  1. ├─SummarizedExperiment::rowRanges(dna.met.chr21.se)
  2. └─SummarizedExperiment::rowRanges(dna.met.chr21.se)
  3.   ├─methods::callGeneric()
  4.   │ └─base::eval(call, parent.frame())
  5.   │   └─base::eval(call, parent.frame())
  6.   ├─MatrixGenerics::rowRanges(x = x)
  7.   └─MatrixGenerics::rowRanges(x = x)
  8.     ├─methods::callGeneric()
  9.     │ └─base::eval(call, parent.frame())
 10.     │   └─base::eval(call, parent.frame())
 11.     ├─MatrixGenerics::rowRanges(x = x)
 12.     └─MatrixGenerics::rowRanges(x = x)
 13.       └─MatrixGenerics:::.load_next_suggested_package_to_search(x)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'MethReg.Rmd' failed with diagnostics:
Failed to find a rowRanges() method for NULL objects.
--- failed re-building ‘MethReg.Rmd’

SUMMARY: processing the following file failed:
  ‘MethReg.Rmd’

Error: Vignette re-building failed.
Execution halted