Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-09-01 11:40 -0400 (Mon, 01 Sep 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4606 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4547 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4579 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1726/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Chi-Lam Poon
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | ERROR | OK | |||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | ERROR | ||||||||||
To the developers/maintainers of the ReactomeContentService4R package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: ReactomeContentService4R |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R |
StartedAt: 2025-08-28 21:49:25 -0400 (Thu, 28 Aug 2025) |
EndedAt: 2025-08-28 21:50:02 -0400 (Thu, 28 Aug 2025) |
EllapsedTime: 37.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R ### ############################################################################## ############################################################################## * checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK * preparing ‘ReactomeContentService4R’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ReactomeContentService4R.Rmd’ using rmarkdown starting worker pid=95303 on localhost:11477 at 21:49:35.704 starting worker pid=95304 on localhost:11477 at 21:49:35.704 Loading required package: ReactomeContentService4R Loading required package: ReactomeContentService4R loaded ReactomeContentService4R and set parent environment loaded ReactomeContentService4R and set parent environment | |= | 1% | |= | 2% | | |== | 3% |== | 4% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |======= | 11% | |======== | 12% | |========= | 12% | |========= | 13% | |========== | 14% | |=========== | 15% | |=========== | 16% | |============ | 17% | |============ | 18% | |============= | 19% | |============== | 19% | |============== | 20% | |=============== | 21% | |=============== | 22% | |================ | 23% | |================= | 24% | |================= | 25% | |================== | 26% | |=================== | 27% | 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in `curl::curl_fetch_memory()`: ! SSL connect error [reactome.org]: Recv failure: Connection reset by peer --- Backtrace: ▆ 1. └─ReactomeContentService4R::query(tp53.re$dbId) 2. └─ReactomeContentService4R:::.retrieveData(url, as = "text") 3. └─base::tryCatch(...) 4. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 6. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ReactomeContentService4R.Rmd' failed with diagnostics: SSL connect error [reactome.org]: Recv failure: Connection reset by peer --- failed re-building ‘ReactomeContentService4R.Rmd’ SUMMARY: processing the following file failed: ‘ReactomeContentService4R.Rmd’ Error: Vignette re-building failed. Execution halted