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This page was generated on 2025-09-01 11:40 -0400 (Mon, 01 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4606
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4547
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1726/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ReactomeContentService4R 1.16.0  (landing page)
Chi-Lam Poon
Snapshot Date: 2025-08-28 13:40 -0400 (Thu, 28 Aug 2025)
git_url: https://git.bioconductor.org/packages/ReactomeContentService4R
git_branch: RELEASE_3_21
git_last_commit: b28addf
git_last_commit_date: 2025-04-15 12:15:41 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    ERROR  
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    ERROR    OK  
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    ERROR  


BUILD results for ReactomeContentService4R on merida1

To the developers/maintainers of the ReactomeContentService4R package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ReactomeContentService4R
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R
StartedAt: 2025-08-28 21:49:25 -0400 (Thu, 28 Aug 2025)
EndedAt: 2025-08-28 21:50:02 -0400 (Thu, 28 Aug 2025)
EllapsedTime: 37.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ReactomeContentService4R
###
##############################################################################
##############################################################################


* checking for file ‘ReactomeContentService4R/DESCRIPTION’ ... OK
* preparing ‘ReactomeContentService4R’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ReactomeContentService4R.Rmd’ using rmarkdown
starting worker pid=95303 on localhost:11477 at 21:49:35.704
starting worker pid=95304 on localhost:11477 at 21:49:35.704
Loading required package: ReactomeContentService4R
Loading required package: ReactomeContentService4R
loaded ReactomeContentService4R and set parent environment
loaded ReactomeContentService4R and set parent environment

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  |======================================================================| 100%Warning message:
In fun(libname, pkgname) :
  Package 'ReactomeContentService4R' is deprecated and will be removed
  from Bioconductor version 3.22
Warning message:
In fun(libname, pkgname) :
  Package 'ReactomeContentService4R' is deprecated and will be removed
  from Bioconductor version 3.22

Quitting from ReactomeContentService4R.Rmd:166-170 [ref-pe]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! SSL connect error [reactome.org]:
Recv failure: Connection reset by peer
---
Backtrace:
    ▆
 1. └─ReactomeContentService4R::query(tp53.re$dbId)
 2.   └─ReactomeContentService4R:::.retrieveData(url, as = "text")
 3.     └─base::tryCatch(...)
 4.       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 5.         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 6.           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ReactomeContentService4R.Rmd' failed with diagnostics:
SSL connect error [reactome.org]:
Recv failure: Connection reset by peer
--- failed re-building ‘ReactomeContentService4R.Rmd’

SUMMARY: processing the following file failed:
  ‘ReactomeContentService4R.Rmd’

Error: Vignette re-building failed.
Execution halted