Multiple platform build/check report for BioC 3.21 - BUILD results for SingleCellAlleleExperiment on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SingleCellAlleleExperiment on palomino7

To the developers/maintainers of the SingleCellAlleleExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellAlleleExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SingleCellAlleleExperiment

Version: 1.4.1

Command: chmod a+r SingleCellAlleleExperiment -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SingleCellAlleleExperiment

StartedAt: 2025-08-07 22:01:08 -0400 (Thu, 07 Aug 2025)

EndedAt: 2025-08-07 22:02:11 -0400 (Thu, 07 Aug 2025)

EllapsedTime: 62.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r SingleCellAlleleExperiment -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SingleCellAlleleExperiment
###
##############################################################################
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* checking for file 'SingleCellAlleleExperiment/DESCRIPTION' ... OK
* preparing 'SingleCellAlleleExperiment':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'scae_intro.Rmd' using rmarkdown

Quitting from scae_intro.Rmd:228-238 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in file(file, "rt"): cannot open the connection
---
Backtrace:
    ▆
 1. └─SingleCellAlleleExperiment::read_allele_counts(...)
 2.   ├─BiocParallel::bplapply(...)
 3.   └─BiocParallel::bplapply(...)
 4.     └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'scae_intro.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in file(file, "rt"): cannot open the connection

--- failed re-building 'scae_intro.Rmd'

SUMMARY: processing the following file failed:
  'scae_intro.Rmd'

Error: Vignette re-building failed.
Execution halted