Aaron Lun
| Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/basilisk |
| git_branch: RELEASE_3_21 |
| git_last_commit: 072c38e |
| git_last_commit_date: 2025-04-15 11:54:33 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 140/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| basilisk 1.20.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the basilisk package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/basilisk.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: basilisk |
| Version: 1.20.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings basilisk_1.20.0.tar.gz |
| StartedAt: 2025-10-14 06:28:11 -0000 (Tue, 14 Oct 2025) |
| EndedAt: 2025-10-14 06:57:38 -0000 (Tue, 14 Oct 2025) |
| EllapsedTime: 1766.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: basilisk.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:basilisk.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings basilisk_1.20.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck’
* using R Under development (unstable) (2025-02-19 r87757)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘basilisk/DESCRIPTION’ ... OK
* this is package ‘basilisk’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
inst/example/.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘basilisk’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
basiliskStart.Rd: activateEnvironment, getExternalDir
listPackages.Rd: installConda
useBasiliskEnv.Rd: activateEnvironment
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
basiliskStart 78.402 6.449 145.891
createLocalBasiliskEnv 29.786 2.754 45.326
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/00check.log’
for details.
basilisk.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL basilisk ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’ * installing *source* package ‘basilisk’ ... ** this is package ‘basilisk’ version ‘1.20.0’ ** using non-staged installation via StagedInstall field ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (basilisk)
basilisk.Rcheck/tests/testthat.Rout
R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(basilisk)
Loading required package: reticulate
> if (.Platform$OS.type != "windows") test_check("basilisk")
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.3-py312ha2895bd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | / - done
Verifying transaction: | / - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-15.2.0-hf1166c9_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.2-py312h14eacfc_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | / done
Verifying transaction: \ | / - \ | / - \ | / - \ | done
Executing transaction: - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - \ done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - done
Verifying transaction: | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ done
Collecting pandas==2.2.2
Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl.metadata (19 kB)
Collecting numpy>=1.26.0 (from pandas==2.2.2)
Using cached numpy-2.3.3-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl.metadata (62 kB)
Requirement already satisfied: python-dateutil>=2.8.2 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2.8.2)
Requirement already satisfied: pytz>=2020.1 in ./install-test-client/thingo/lib/python3.12/site-packages (from pandas==2.2.2) (2023.4)
Collecting tzdata>=2022.7 (from pandas==2.2.2)
Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
Requirement already satisfied: six>=1.5 in ./install-test-client/thingo/lib/python3.12/site-packages (from python-dateutil>=2.8.2->pandas==2.2.2) (1.17.0)
Using cached pandas-2.2.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (15.2 MB)
Using cached numpy-2.3.3-cp312-cp312-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl (14.3 MB)
Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
Installing collected packages: tzdata, numpy, pandas
Successfully installed numpy-2.3.3 pandas-2.2.2 tzdata-2025.2
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Processing /home/biocbuild/R/R-devel_2025-02-19/site-library/basilisk/example/inst/test_dummy
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Building wheels for collected packages: test_dummy
DEPRECATION: Building 'test_dummy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'test_dummy'. Discussion can be found at https://github.com/pypa/pip/issues/6334
Building wheel for test_dummy (setup.py): started
Building wheel for test_dummy (setup.py): finished with status 'done'
Created wheel for test_dummy: filename=test_dummy-0.1-py3-none-any.whl size=1312 sha256=a615fd055d1209da5eae9bfe93848556dc25a3be6611cc1282fdffea1e91ff85
Stored in directory: /home/biocbuild/tmp/pip-ephem-wheel-cache-klo202cg/wheels/26/cd/d9/536b7fac5ac9387e87d9966c9135cff83dc81cb9d4aa102865
Successfully built test_dummy
Installing collected packages: test_dummy
Successfully installed test_dummy-0.1
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/thingo
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
PackagesNotFoundError: The following packages are not available from current channels:
- whheeeeeeeeeeeeeeeeee=0.0.1*
Current channels:
- https://conda.anaconda.org/conda-forge
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
trying URL 'https://github.com/conda-forge/miniforge/releases/download/24.11.3-0/Miniforge3-24.11.3-0-Linux-aarch64.sh'
Content type 'application/octet-stream' length 76541205 bytes (73.0 MB)
==================================================
downloaded 73.0 MB
PREFIX=/home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/0
Unpacking payload ...
Extracting ca-certificates-2024.12.14-hcefe29a_0.conda
Extracting ld_impl_linux-aarch64-2.43-h80caac9_2.conda
Extracting libgomp-14.2.0-he277a41_1.conda
Extracting pybind11-abi-4-hd8ed1ab_3.tar.bz2
Extracting python_abi-3.12-5_cp312.conda
Extracting tzdata-2025a-h78e105d_0.conda
Extracting _openmp_mutex-4.5-2_gnu.tar.bz2
Extracting libgcc-14.2.0-he277a41_1.conda
Extracting c-ares-1.34.4-h86ecc28_0.conda
Extracting libexpat-2.6.4-h5ad3122_0.conda
Extracting libgcc-ng-14.2.0-he9431aa_1.conda
Extracting liblzma-5.6.3-h86ecc28_1.conda
Extracting libstdcxx-14.2.0-h3f4de04_1.conda
Extracting libzlib-1.3.1-h86ecc28_2.conda
Extracting ncurses-6.5-ha32ae93_2.conda
Extracting openssl-3.4.0-hd08dc88_1.conda
Extracting bzip2-1.0.8-h68df207_7.conda
Extracting keyutils-1.6.1-h4e544f5_0.tar.bz2
Extracting libedit-3.1.20240808-pl5321h976ea20_0.conda
Extracting libev-4.33-h31becfc_2.conda
Extracting libffi-3.4.2-h3557bc0_5.tar.bz2
Extracting libiconv-1.17-h31becfc_2.conda
Extracting libnsl-2.0.1-h31becfc_0.conda
Extracting libsqlite-3.48.0-h5eb1b54_0.conda
Extracting libssh2-1.11.1-ha41c0db_0.conda
Extracting libstdcxx-ng-14.2.0-hf1166c9_1.conda
Extracting libuuid-2.38.1-hb4cce97_0.conda
Extracting libxcrypt-4.4.36-h31becfc_1.conda
Extracting lz4-c-1.10.0-h5ad3122_1.conda
Extracting lzo-2.10-h31becfc_1001.conda
Extracting readline-8.2-h8fc344f_1.conda
Extracting reproc-14.2.4.post0-h31becfc_1.conda
Extracting tk-8.6.13-h194ca79_0.conda
Extracting fmt-11.0.2-h70be974_0.conda
Extracting icu-75.1-hf9b3779_0.conda
Extracting krb5-1.21.3-h50a48e9_0.conda
Extracting libnghttp2-1.64.0-hc8609a4_0.conda
Extracting libsolv-0.7.30-h62756fc_0.conda
Extracting python-3.12.8-h1683364_1_cpython.conda
Extracting reproc-cpp-14.2.4.post0-h2f0025b_1.conda
Extracting yaml-cpp-0.8.0-h2f0025b_0.conda
Extracting zstd-1.5.6-h02f22dd_0.conda
Extracting libcurl-8.11.1-h6702fde_0.conda
Extracting libxml2-2.13.5-h2e0c361_1.conda
Extracting menuinst-2.2.0-py312h996f985_0.conda
Extracting archspec-0.2.5-pyhd8ed1ab_0.conda
Extracting boltons-24.0.0-pyhd8ed1ab_1.conda
Extracting brotli-python-1.1.0-py312h6f74592_2.conda
Extracting certifi-2024.12.14-pyhd8ed1ab_0.conda
Extracting charset-normalizer-3.4.1-pyhd8ed1ab_0.conda
Extracting colorama-0.4.6-pyhd8ed1ab_1.conda
Extracting distro-1.9.0-pyhd8ed1ab_1.conda
Extracting frozendict-2.4.6-py312hb2c0f52_0.conda
Extracting hpack-4.0.0-pyhd8ed1ab_1.conda
Extracting hyperframe-6.0.1-pyhd8ed1ab_1.conda
Extracting idna-3.10-pyhd8ed1ab_1.conda
Extracting jsonpointer-3.0.0-py312h996f985_1.conda
Extracting libarchive-3.7.7-h6223a6c_3.conda
Extracting packaging-24.2-pyhd8ed1ab_2.conda
Extracting platformdirs-4.3.6-pyhd8ed1ab_1.conda
Extracting pluggy-1.5.0-pyhd8ed1ab_1.conda
Extracting pycosat-0.6.6-py312hb2c0f52_2.conda
Extracting pycparser-2.22-pyh29332c3_1.conda
Extracting pysocks-1.7.1-pyha55dd90_7.conda
Extracting ruamel.yaml.clib-0.2.8-py312hb2c0f52_1.conda
Extracting setuptools-75.8.0-pyhff2d567_0.conda
Extracting truststore-0.10.0-pyhd8ed1ab_0.conda
Extracting wheel-0.45.1-pyhd8ed1ab_1.conda
Extracting cffi-1.17.1-py312hac81daf_0.conda
Extracting h2-4.1.0-pyhd8ed1ab_1.conda
Extracting jsonpatch-1.33-pyhd8ed1ab_1.conda
Extracting libmamba-1.5.12-h4f7d7cb_0.conda
Extracting pip-24.3.1-pyh8b19718_2.conda
Extracting ruamel.yaml-0.18.10-py312hb2c0f52_0.conda
Extracting tqdm-4.67.1-pyhd8ed1ab_1.conda
Extracting libmambapy-1.5.12-py312h3a133d2_0.conda
Extracting zstandard-0.23.0-py312hb698573_1.conda
Extracting conda-package-streaming-0.11.0-pyhd8ed1ab_0.conda
Extracting urllib3-2.3.0-pyhd8ed1ab_0.conda
Extracting requests-2.32.3-pyhd8ed1ab_1.conda
Extracting conda-package-handling-2.4.0-pyh7900ff3_2.conda
Extracting conda-24.11.3-py312h996f985_0.conda
Extracting conda-libmamba-solver-24.9.0-pyhd8ed1ab_0.conda
Extracting mamba-1.5.12-py312hd80a4d2_0.conda
Installing base environment...
Transaction
Prefix: /home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/0
Updating specs:
- conda-forge/linux-aarch64::ca-certificates==2024.12.14=hcefe29a_0[md5=83b4ad1e6dc14df5891f3fcfdeb44351]
- conda-forge/linux-aarch64::ld_impl_linux-aarch64==2.43=h80caac9_2[md5=fcbde5ea19d55468953bf588770c0501]
- conda-forge/linux-aarch64::libgomp==14.2.0=he277a41_1[md5=376f0e73abbda6d23c0cb749adc195ef]
- conda-forge/noarch::pybind11-abi==4=hd8ed1ab_3[md5=878f923dd6acc8aeb47a75da6c4098be]
- conda-forge/linux-aarch64::python_abi==3.12=5_cp312[md5=62b20f305498284a07dc6c45fd0e5c87]
- conda-forge/noarch::tzdata==2025a=h78e105d_0[md5=dbcace4706afdfb7eb891f7b37d07c04]
- conda-forge/linux-aarch64::_openmp_mutex==4.5=2_gnu[md5=6168d71addc746e8f2b8d57dfd2edcea]
- conda-forge/linux-aarch64::libgcc==14.2.0=he277a41_1[md5=511b511c5445e324066c3377481bcab8]
- conda-forge/linux-aarch64::c-ares==1.34.4=h86ecc28_0[md5=356da36f35d36dcba16e43f1589d4e39]
- conda-forge/linux-aarch64::libexpat==2.6.4=h5ad3122_0[md5=f1b3fab36861b3ce945a13f0dfdfc688]
- conda-forge/linux-aarch64::libgcc-ng==14.2.0=he9431aa_1[md5=0694c249c61469f2c0f7e2990782af21]
- conda-forge/linux-aarch64::liblzma==5.6.3=h86ecc28_1[md5=eb08b903681f9f2432c320e8ed626723]
- conda-forge/linux-aarch64::libstdcxx==14.2.0=h3f4de04_1[md5=37f489acd39e22b623d2d1e5ac6d195c]
- conda-forge/linux-aarch64::libzlib==1.3.1=h86ecc28_2[md5=08aad7cbe9f5a6b460d0976076b6ae64]
- conda-forge/linux-aarch64::ncurses==6.5=ha32ae93_2[md5=779046fb585c71373e8a051be06c6011]
- conda-forge/linux-aarch64::openssl==3.4.0=hd08dc88_1[md5=e21c4767e783a58c373fdb99de6211bf]
- conda-forge/linux-aarch64::bzip2==1.0.8=h68df207_7[md5=56398c28220513b9ea13d7b450acfb20]
- conda-forge/linux-aarch64::keyutils==1.6.1=h4e544f5_0[md5=1f24853e59c68892452ef94ddd8afd4b]
- conda-forge/linux-aarch64::libedit==3.1.20240808=pl5321h976ea20_0[md5=0be40129d3dd1a152fff29a85f0785d0]
- conda-forge/linux-aarch64::libev==4.33=h31becfc_2[md5=a9a13cb143bbaa477b1ebaefbe47a302]
- conda-forge/linux-aarch64::libffi==3.4.2=h3557bc0_5[md5=dddd85f4d52121fab0a8b099c5e06501]
- conda-forge/linux-aarch64::libiconv==1.17=h31becfc_2[md5=9a8eb13f14de7d761555a98712e6df65]
- conda-forge/linux-aarch64::libnsl==2.0.1=h31becfc_0[md5=c14f32510f694e3185704d89967ec422]
- conda-forge/linux-aarch64::libsqlite==3.48.0=h5eb1b54_0[md5=1998946fa3ccf38a07b44a879b2227ae]
- conda-forge/linux-aarch64::libssh2==1.11.1=ha41c0db_0[md5=aeffe03c0e598f015aab08dbb04f6ee4]
- conda-forge/linux-aarch64::libstdcxx-ng==14.2.0=hf1166c9_1[md5=0e75771b8a03afae5a2c6ce71bc733f5]
- conda-forge/linux-aarch64::libuuid==2.38.1=hb4cce97_0[md5=000e30b09db0b7c775b21695dff30969]
- conda-forge/linux-aarch64::libxcrypt==4.4.36=h31becfc_1[md5=b4df5d7d4b63579d081fd3a4cf99740e]
- conda-forge/linux-aarch64::lz4-c==1.10.0=h5ad3122_1[md5=6654e411da94011e8fbe004eacb8fe11]
- conda-forge/linux-aarch64::lzo==2.10=h31becfc_1001[md5=004025fe20a11090e0b02154f413a758]
- conda-forge/linux-aarch64::readline==8.2=h8fc344f_1[md5=105eb1e16bf83bfb2eb380a48032b655]
- conda-forge/linux-aarch64::reproc==14.2.4.post0=h31becfc_1[md5=c148bb4ba029a018527d3e4d5c7b63fa]
- conda-forge/linux-aarch64::tk==8.6.13=h194ca79_0[md5=f75105e0585851f818e0009dd1dde4dc]
- conda-forge/linux-aarch64::fmt==11.0.2=h70be974_0[md5=32feda3daf08ff832cf9d55bab2432d6]
- conda-forge/linux-aarch64::icu==75.1=hf9b3779_0[md5=268203e8b983fddb6412b36f2024e75c]
- conda-forge/linux-aarch64::krb5==1.21.3=h50a48e9_0[md5=29c10432a2ca1472b53f299ffb2ffa37]
- conda-forge/linux-aarch64::libnghttp2==1.64.0=hc8609a4_0[md5=f52c614fa214a8bedece9421c771670d]
- conda-forge/linux-aarch64::libsolv==0.7.30=h62756fc_0[md5=3313c18870220c75fdd8374406ef7491]
- conda-forge/linux-aarch64::python==3.12.8=h1683364_1_cpython[md5=09ec612ea05370989eaa3d81abf0f369]
- conda-forge/linux-aarch64::reproc-cpp==14.2.4.post0=h2f0025b_1[md5=35148ef0f190022ca52cf6edd6bdc814]
- conda-forge/linux-aarch64::yaml-cpp==0.8.0=h2f0025b_0[md5=b5da38ee183c1e50e3e7ffb171a2eca5]
- conda-forge/linux-aarch64::zstd==1.5.6=h02f22dd_0[md5=be8d5f8cf21aed237b8b182ea86b3dd6]
- conda-forge/linux-aarch64::libcurl==8.11.1=h6702fde_0[md5=7dec1cd271c403d1636bda5aa388a55d]
- conda-forge/linux-aarch64::libxml2==2.13.5=h2e0c361_1[md5=63410f85031930cde371dfe0ee89109a]
- conda-forge/linux-aarch64::menuinst==2.2.0=py312h996f985_0[md5=ef25ec436741df9dbcb2831b4ccb160d]
- conda-forge/noarch::archspec==0.2.5=pyhd8ed1ab_0[md5=845b38297fca2f2d18a29748e2ece7fa]
- conda-forge/noarch::boltons==24.0.0=pyhd8ed1ab_1[md5=d88c38e66d85ecc9c7e2c4110676bbf4]
- conda-forge/linux-aarch64::brotli-python==1.1.0=py312h6f74592_2[md5=e1e9727063057168d95f27a032acd0a4]
- conda-forge/noarch::certifi==2024.12.14=pyhd8ed1ab_0[md5=6feb87357ecd66733be3279f16a8c400]
- conda-forge/noarch::charset-normalizer==3.4.1=pyhd8ed1ab_0[md5=e83a31202d1c0a000fce3e9cf3825875]
- conda-forge/noarch::colorama==0.4.6=pyhd8ed1ab_1[md5=962b9857ee8e7018c22f2776ffa0b2d7]
- conda-forge/noarch::distro==1.9.0=pyhd8ed1ab_1[md5=0a2014fd9860f8b1eaa0b1f3d3771a08]
- conda-forge/linux-aarch64::frozendict==2.4.6=py312hb2c0f52_0[md5=e50996bfdb4966e93dac45126b2df97e]
- conda-forge/noarch::hpack==4.0.0=pyhd8ed1ab_1[md5=2aa5ff7fa34a81b9196532c84c10d865]
- conda-forge/noarch::hyperframe==6.0.1=pyhd8ed1ab_1[md5=566e75c90c1d0c8c459eb0ad9833dc7a]
- conda-forge/noarch::idna==3.10=pyhd8ed1ab_1[md5=39a4f67be3286c86d696df570b1201b7]
- conda-forge/linux-aarch64::jsonpointer==3.0.0=py312h996f985_1[md5=2257c5f33024274faadf6a88a7d62807]
- conda-forge/linux-aarch64::libarchive==3.7.7=h6223a6c_3[md5=e5ab5ecbdc352a5decae39c30c248fb8]
- conda-forge/noarch::packaging==24.2=pyhd8ed1ab_2[md5=3bfed7e6228ebf2f7b9eaa47f1b4e2aa]
- conda-forge/noarch::platformdirs==4.3.6=pyhd8ed1ab_1[md5=577852c7e53901ddccc7e6a9959ddebe]
- conda-forge/noarch::pluggy==1.5.0=pyhd8ed1ab_1[md5=e9dcbce5f45f9ee500e728ae58b605b6]
- conda-forge/linux-aarch64::pycosat==0.6.6=py312hb2c0f52_2[md5=a5bd669336a31b5250e8d76dd6b8d659]
- conda-forge/noarch::pycparser==2.22=pyh29332c3_1[md5=12c566707c80111f9799308d9e265aef]
- conda-forge/noarch::pysocks==1.7.1=pyha55dd90_7[md5=461219d1a5bd61342293efa2c0c90eac]
- conda-forge/linux-aarch64::ruamel.yaml.clib==0.2.8=py312hb2c0f52_1[md5=189e58f9d58f36f522ceda028f5249f8]
- conda-forge/noarch::setuptools==75.8.0=pyhff2d567_0[md5=8f28e299c11afdd79e0ec1e279dcdc52]
- conda-forge/noarch::truststore==0.10.0=pyhd8ed1ab_0[md5=ad1c20cd193e3044bcf17798c33b9d67]
- conda-forge/noarch::wheel==0.45.1=pyhd8ed1ab_1[md5=75cb7132eb58d97896e173ef12ac9986]
- conda-forge/linux-aarch64::cffi==1.17.1=py312hac81daf_0[md5=1a256e5581b1099e9295cb84d53db3ea]
- conda-forge/noarch::h2==4.1.0=pyhd8ed1ab_1[md5=825927dc7b0f287ef8d4d0011bb113b1]
- conda-forge/noarch::jsonpatch==1.33=pyhd8ed1ab_1[md5=cb60ae9cf02b9fcb8004dec4089e5691]
- conda-forge/linux-aarch64::libmamba==1.5.12=h4f7d7cb_0[md5=2945e64978cf3ef893e288647e7eec9f]
- conda-forge/noarch::pip==24.3.1=pyh8b19718_2[md5=04e691b9fadd93a8a9fad87a81d4fd8f]
- conda-forge/linux-aarch64::ruamel.yaml==0.18.10=py312hb2c0f52_0[md5=c75b8727857e618b3c1b395144f8c857]
- conda-forge/noarch::tqdm==4.67.1=pyhd8ed1ab_1[md5=9efbfdc37242619130ea42b1cc4ed861]
- conda-forge/linux-aarch64::libmambapy==1.5.12=py312h3a133d2_0[md5=504f93a0a909a3e8dd256c29e5f040c9]
- conda-forge/linux-aarch64::zstandard==0.23.0=py312hb698573_1[md5=ffcb8e97e62af42075e0e5f46bb9856e]
- conda-forge/noarch::conda-package-streaming==0.11.0=pyhd8ed1ab_0[md5=bc9533d8616a97551ed144789bf9c1cd]
- conda-forge/noarch::urllib3==2.3.0=pyhd8ed1ab_0[md5=32674f8dbfb7b26410ed580dd3c10a29]
- conda-forge/noarch::requests==2.32.3=pyhd8ed1ab_1[md5=a9b9368f3701a417eac9edbcae7cb737]
- conda-forge/noarch::conda-package-handling==2.4.0=pyh7900ff3_2[md5=32c158f481b4fd7630c565030f7bc482]
- conda-forge/linux-aarch64::conda==24.11.3=py312h996f985_0[md5=e1d55b58dee9a68297fa6c6efe484462]
- conda-forge/noarch::conda-libmamba-solver==24.9.0=pyhd8ed1ab_0[md5=45378d089c5f72c9c0d63d58414c645d]
- conda-forge/linux-aarch64::mamba==1.5.12=py312hd80a4d2_0[md5=55bec65cae19b62392d3e580f39c547a]
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────
+ ca-certificates 2024.12.14 hcefe29a_0 conda-forge
+ ld_impl_linux-aarch64 2.43 h80caac9_2 conda-forge
+ libgomp 14.2.0 he277a41_1 conda-forge
+ pybind11-abi 4 hd8ed1ab_3 conda-forge
+ python_abi 3.12 5_cp312 conda-forge
+ tzdata 2025a h78e105d_0 conda-forge
+ _openmp_mutex 4.5 2_gnu conda-forge
+ libgcc 14.2.0 he277a41_1 conda-forge
+ c-ares 1.34.4 h86ecc28_0 conda-forge
+ libexpat 2.6.4 h5ad3122_0 conda-forge
+ libgcc-ng 14.2.0 he9431aa_1 conda-forge
+ liblzma 5.6.3 h86ecc28_1 conda-forge
+ libstdcxx 14.2.0 h3f4de04_1 conda-forge
+ libzlib 1.3.1 h86ecc28_2 conda-forge
+ ncurses 6.5 ha32ae93_2 conda-forge
+ openssl 3.4.0 hd08dc88_1 conda-forge
+ bzip2 1.0.8 h68df207_7 conda-forge
+ keyutils 1.6.1 h4e544f5_0 conda-forge
+ libedit 3.1.20240808 pl5321h976ea20_0 conda-forge
+ libev 4.33 h31becfc_2 conda-forge
+ libffi 3.4.2 h3557bc0_5 conda-forge
+ libiconv 1.17 h31becfc_2 conda-forge
+ libnsl 2.0.1 h31becfc_0 conda-forge
+ libsqlite 3.48.0 h5eb1b54_0 conda-forge
+ libssh2 1.11.1 ha41c0db_0 conda-forge
+ libstdcxx-ng 14.2.0 hf1166c9_1 conda-forge
+ libuuid 2.38.1 hb4cce97_0 conda-forge
+ libxcrypt 4.4.36 h31becfc_1 conda-forge
+ lz4-c 1.10.0 h5ad3122_1 conda-forge
+ lzo 2.10 h31becfc_1001 conda-forge
+ readline 8.2 h8fc344f_1 conda-forge
+ reproc 14.2.4.post0 h31becfc_1 conda-forge
+ tk 8.6.13 h194ca79_0 conda-forge
+ fmt 11.0.2 h70be974_0 conda-forge
+ icu 75.1 hf9b3779_0 conda-forge
+ krb5 1.21.3 h50a48e9_0 conda-forge
+ libnghttp2 1.64.0 hc8609a4_0 conda-forge
+ libsolv 0.7.30 h62756fc_0 conda-forge
+ python 3.12.8 h1683364_1_cpython conda-forge
+ reproc-cpp 14.2.4.post0 h2f0025b_1 conda-forge
+ yaml-cpp 0.8.0 h2f0025b_0 conda-forge
+ zstd 1.5.6 h02f22dd_0 conda-forge
+ libcurl 8.11.1 h6702fde_0 conda-forge
+ libxml2 2.13.5 h2e0c361_1 conda-forge
+ menuinst 2.2.0 py312h996f985_0 conda-forge
+ archspec 0.2.5 pyhd8ed1ab_0 conda-forge
+ boltons 24.0.0 pyhd8ed1ab_1 conda-forge
+ brotli-python 1.1.0 py312h6f74592_2 conda-forge
+ certifi 2024.12.14 pyhd8ed1ab_0 conda-forge
+ charset-normalizer 3.4.1 pyhd8ed1ab_0 conda-forge
+ colorama 0.4.6 pyhd8ed1ab_1 conda-forge
+ distro 1.9.0 pyhd8ed1ab_1 conda-forge
+ frozendict 2.4.6 py312hb2c0f52_0 conda-forge
+ hpack 4.0.0 pyhd8ed1ab_1 conda-forge
+ hyperframe 6.0.1 pyhd8ed1ab_1 conda-forge
+ idna 3.10 pyhd8ed1ab_1 conda-forge
+ jsonpointer 3.0.0 py312h996f985_1 conda-forge
+ libarchive 3.7.7 h6223a6c_3 conda-forge
+ packaging 24.2 pyhd8ed1ab_2 conda-forge
+ platformdirs 4.3.6 pyhd8ed1ab_1 conda-forge
+ pluggy 1.5.0 pyhd8ed1ab_1 conda-forge
+ pycosat 0.6.6 py312hb2c0f52_2 conda-forge
+ pycparser 2.22 pyh29332c3_1 conda-forge
+ pysocks 1.7.1 pyha55dd90_7 conda-forge
+ ruamel.yaml.clib 0.2.8 py312hb2c0f52_1 conda-forge
+ setuptools 75.8.0 pyhff2d567_0 conda-forge
+ truststore 0.10.0 pyhd8ed1ab_0 conda-forge
+ wheel 0.45.1 pyhd8ed1ab_1 conda-forge
+ cffi 1.17.1 py312hac81daf_0 conda-forge
+ h2 4.1.0 pyhd8ed1ab_1 conda-forge
+ jsonpatch 1.33 pyhd8ed1ab_1 conda-forge
+ libmamba 1.5.12 h4f7d7cb_0 conda-forge
+ pip 24.3.1 pyh8b19718_2 conda-forge
+ ruamel.yaml 0.18.10 py312hb2c0f52_0 conda-forge
+ tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
+ libmambapy 1.5.12 py312h3a133d2_0 conda-forge
+ zstandard 0.23.0 py312hb698573_1 conda-forge
+ conda-package-streaming 0.11.0 pyhd8ed1ab_0 conda-forge
+ urllib3 2.3.0 pyhd8ed1ab_0 conda-forge
+ requests 2.32.3 pyhd8ed1ab_1 conda-forge
+ conda-package-handling 2.4.0 pyh7900ff3_2 conda-forge
+ conda 24.11.3 py312h996f985_0 conda-forge
+ conda-libmamba-solver 24.9.0 pyhd8ed1ab_0 conda-forge
+ mamba 1.5.12 py312hd80a4d2_0 conda-forge
Summary:
Install: 84 packages
Total download: 0 B
─────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Transaction finished
To activate this environment, use:
micromamba activate /home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/0
Or to execute a single command in this environment, use:
micromamba run -p /home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/0 mycommand
installation finished.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/basilisk.utils/1.20.0/test
added / updated specs:
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
bzip2-1.0.8 | h4777abc_8 188 KB conda-forge
ca-certificates-2025.10.5 | hbd8a1cb_0 152 KB conda-forge
ld_impl_linux-aarch64-2.44 | h9df1782_2 769 KB conda-forge
libexpat-2.7.1 | hfae3067_0 73 KB conda-forge
libffi-3.5.2 | hd65408f_0 54 KB conda-forge
libgcc-15.2.0 | he277a41_7 499 KB conda-forge
libgcc-ng-15.2.0 | he9431aa_7 29 KB conda-forge
libgomp-15.2.0 | he277a41_7 440 KB conda-forge
liblzma-5.8.1 | h86ecc28_2 122 KB conda-forge
libnsl-2.0.1 | h86ecc28_1 34 KB conda-forge
libsqlite-3.50.4 | h022381a_0 910 KB conda-forge
libuuid-2.41.2 | h3e4203c_0 38 KB conda-forge
ncurses-6.5 | ha32ae93_3 904 KB conda-forge
openssl-3.5.4 | h8e36d6e_0 3.5 MB conda-forge
pip-25.2 | pyh8b19718_0 1.1 MB conda-forge
readline-8.2 | h8382b9d_2 285 KB conda-forge
setuptools-80.9.0 | pyhff2d567_0 731 KB conda-forge
tk-8.6.13 |noxft_h5688188_102 3.2 MB conda-forge
tzdata-2025b | h78e105d_0 120 KB conda-forge
------------------------------------------------------------
Total: 13.0 MB
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/tmp/RtmpiVIxDw/file3d4d1e6f271714/1.20.0/basilisk.utils/1.20.0/test
added / updated specs:
- pandas=2.2.3
- python=3.12.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
libblas-3.9.0 |37_haddc8a3_openblas 17 KB conda-forge
libcblas-3.9.0 |37_hd72aa62_openblas 17 KB conda-forge
libgfortran-15.2.0 | he9431aa_7 29 KB conda-forge
libgfortran5-15.2.0 | h87db57e_7 1.1 MB conda-forge
liblapack-3.9.0 |37_h88aeb00_openblas 17 KB conda-forge
libopenblas-0.3.30 |pthreads_h9d3fd7e_2 4.7 MB conda-forge
libstdcxx-15.2.0 | h3f4de04_7 3.7 MB conda-forge
numpy-2.3.3 | py312h6615c27_0 7.3 MB conda-forge
pandas-2.2.3 | py312ha2895bd_3 14.4 MB conda-forge
python-dateutil-2.9.0.post0| pyhe01879c_2 228 KB conda-forge
python-tzdata-2025.2 | pyhd8ed1ab_0 141 KB conda-forge
python_abi-3.12 | 8_cp312 7 KB conda-forge
pytz-2025.2 | pyhd8ed1ab_0 185 KB conda-forge
six-1.17.0 | pyhe01879c_1 18 KB conda-forge
------------------------------------------------------------
Total: 31.8 MB
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.3-py312ha2895bd_3
python-dateutil conda-forge/noarch::python-dateutil-2.9.0.post0-pyhe01879c_2
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2025.2-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working...
pandas-2.2.3 | 14.4 MB | | 0%
numpy-2.3.3 | 7.3 MB | | 0% [A
libopenblas-0.3.30 | 4.7 MB | | 0% [A[A
libstdcxx-15.2.0 | 3.7 MB | | 0% [A[A[A
libgfortran5-15.2.0 | 1.1 MB | | 0% [A[A[A[A
python-dateutil-2.9. | 228 KB | | 0% [A[A[A[A[A
pytz-2025.2 | 185 KB | | 0% [A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | | 0% [A[A[A[A[A[A[A
libgfortran-15.2.0 | 29 KB | | 0% [A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | | 0% [A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | | 0% [A[A[A[A[A[A[A[A[A[A[A[A[A
numpy-2.3.3 | 7.3 MB | | 0% [A
libgfortran5-15.2.0 | 1.1 MB | 1 | 1% [A[A[A[A
libgfortran5-15.2.0 | 1.1 MB | ########## | 100% [A[A[A[A
libstdcxx-15.2.0 | 3.7 MB | | 0% [A[A[A
libgfortran5-15.2.0 | 1.1 MB | ########## | 100% [A[A[A[A
pandas-2.2.3 | 14.4 MB | | 0%
libopenblas-0.3.30 | 4.7 MB | | 0% [A[A
libopenblas-0.3.30 | 4.7 MB | | 1% [A[A
libopenblas-0.3.30 | 4.7 MB | 1 | 2% [A[A
libopenblas-0.3.30 | 4.7 MB | 2 | 3% [A[A
libopenblas-0.3.30 | 4.7 MB | 3 | 3% [A[A
libopenblas-0.3.30 | 4.7 MB | 3 | 4% [A[A
numpy-2.3.3 | 7.3 MB | #9 | 20% [A
libopenblas-0.3.30 | 4.7 MB | 4 | 5% [A[A
libstdcxx-15.2.0 | 3.7 MB | 2 | 3% [A[A[A
python-dateutil-2.9. | 228 KB | 7 | 7% [A[A[A[A[A
pandas-2.2.3 | 14.4 MB | | 1%
libopenblas-0.3.30 | 4.7 MB | 5 | 6% [A[A
libopenblas-0.3.30 | 4.7 MB | 5 | 6% [A[A
libopenblas-0.3.30 | 4.7 MB | 6 | 7% [A[A
libopenblas-0.3.30 | 4.7 MB | 7 | 8% [A[A
libopenblas-0.3.30 | 4.7 MB | 9 | 9% [A[A
libopenblas-0.3.30 | 4.7 MB | #4 | 14% [A[A
numpy-2.3.3 | 7.3 MB | ##7 | 28% [A
libstdcxx-15.2.0 | 3.7 MB | ###5 | 35% [A[A[A
python-dateutil-2.9. | 228 KB | #########8 | 98% [A[A[A[A[A
python-dateutil-2.9. | 228 KB | ########## | 100% [A[A[A[A[A
python-dateutil-2.9. | 228 KB | ########## | 100% [A[A[A[A[A
pandas-2.2.3 | 14.4 MB | 1 | 2%
pytz-2025.2 | 185 KB | 8 | 9% [A[A[A[A[A[A
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | #1 | 11% [A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A
pandas-2.2.3 | 14.4 MB | 9 | 10%
libgfortran-15.2.0 | 29 KB | #####5 | 56% [A[A[A[A[A[A[A[A
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A
pytz-2025.2 | 185 KB | ########## | 100% [A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A
python-tzdata-2025.2 | 141 KB | ########## | 100% [A[A[A[A[A[A[A
pandas-2.2.3 | 14.4 MB | ## | 21%
pandas-2.2.3 | 14.4 MB | ##9 | 30%
pandas-2.2.3 | 14.4 MB | ###2 | 32%
pandas-2.2.3 | 14.4 MB | ###4 | 34%
pandas-2.2.3 | 14.4 MB | ###6 | 37%
pandas-2.2.3 | 14.4 MB | ###7 | 38%
pandas-2.2.3 | 14.4 MB | ###9 | 39%
pandas-2.2.3 | 14.4 MB | #### | 40%
pandas-2.2.3 | 14.4 MB | ####1 | 41%
pandas-2.2.3 | 14.4 MB | ####2 | 42%
pandas-2.2.3 | 14.4 MB | ####3 | 43%
pandas-2.2.3 | 14.4 MB | ####3 | 44%
pandas-2.2.3 | 14.4 MB | ####5 | 45%
pandas-2.2.3 | 14.4 MB | ##### | 50%
pandas-2.2.3 | 14.4 MB | #####4 | 55%
numpy-2.3.3 | 7.3 MB | #####6 | 57% [A
pandas-2.2.3 | 14.4 MB | #####7 | 58%
pandas-2.2.3 | 14.4 MB | #####9 | 60%
numpy-2.3.3 | 7.3 MB | ####### | 70% [A
numpy-2.3.3 | 7.3 MB | #######9 | 79% [A
numpy-2.3.3 | 7.3 MB | ########3 | 84% [A
numpy-2.3.3 | 7.3 MB | ########## | 100% [A
six-1.17.0 | 18 KB | ########8 | 89% [A[A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
six-1.17.0 | 18 KB | ########## | 100% [A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | #########3 | 93% [A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
libblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | #########3 | 94% [A[A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
liblapack-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | #########3 | 94% [A[A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
libcblas-3.9.0 | 17 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A
python_abi-3.12 | 7 KB | ########## | 100% [A[A[A[A[A[A[A[A[A[A[A[A[A
numpy-2.3.3 | 7.3 MB | ########## | 100% [A
numpy-2.3.3 | 7.3 MB | ########## | 100% [A
pandas-2.2.3 | 14.4 MB | ######8 | 68%
pandas-2.2.3 | 14.4 MB | #######5 | 75%
pandas-2.2.3 | 14.4 MB | #######6 | 77%
pandas-2.2.3 | 14.4 MB | #######7 | 78%
pandas-2.2.3 | 14.4 MB | #######9 | 79%
pandas-2.2.3 | 14.4 MB | ########1 | 81%
pandas-2.2.3 | 14.4 MB | ########3 | 83%
libstdcxx-15.2.0 | 3.7 MB | #####2 | 52% [A[A[A
libstdcxx-15.2.0 | 3.7 MB | ######1 | 62% [A[A[A
pandas-2.2.3 | 14.4 MB | ########4 | 84%
pandas-2.2.3 | 14.4 MB | ########4 | 85%
pandas-2.2.3 | 14.4 MB | ########7 | 88%
pandas-2.2.3 | 14.4 MB | ########8 | 89%
pandas-2.2.3 | 14.4 MB | #########4 | 94%
pandas-2.2.3 | 14.4 MB | ########## | 100%
pandas-2.2.3 | 14.4 MB | ########## | 100%
libgfortran-15.2.0 | 29 KB | ########## | 100% [A[A[A[A[A[A[A[A
libgfortran-15.2.0 | 29 KB | ########## | 100% [A[A[A[A[A[A[A[A
libgfortran-15.2.0 | 29 KB | ########## | 100% [A[A[A[A[A[A[A[A
pandas-2.2.3 | 14.4 MB | ########## | 100%
libstdcxx-15.2.0 | 3.7 MB | ######6 | 67% [A[A[A
libopenblas-0.3.30 | 4.7 MB | ##2 | 22% [A[A
libopenblas-0.3.30 | 4.7 MB | ##6 | 26% [A[A
libopenblas-0.3.30 | 4.7 MB | ##9 | 29% [A[A
libopenblas-0.3.30 | 4.7 MB | ###3 | 33% [A[A
libopenblas-0.3.30 | 4.7 MB | ###9 | 40% [A[A
libopenblas-0.3.30 | 4.7 MB | ####6 | 46% [A[A
libopenblas-0.3.30 | 4.7 MB | #####3 | 53% [A[A
libopenblas-0.3.30 | 4.7 MB | ###### | 61% [A[A
libopenblas-0.3.30 | 4.7 MB | ######5 | 66% [A[A
libopenblas-0.3.30 | 4.7 MB | ######8 | 68% [A[A
libopenblas-0.3.30 | 4.7 MB | #######6 | 77% [A[A
libopenblas-0.3.30 | 4.7 MB | ########1 | 82% [A[A
libopenblas-0.3.30 | 4.7 MB | ########6 | 87% [A[A
libstdcxx-15.2.0 | 3.7 MB | #########4 | 95% [A[A[A
libopenblas-0.3.30 | 4.7 MB | #########5 | 96% [A[A
libopenblas-0.3.30 | 4.7 MB | #########8 | 98% [A[A
libopenblas-0.3.30 | 4.7 MB | ########## | 100% [A[A
libopenblas-0.3.30 | 4.7 MB | ########## | 100% [A[A
libstdcxx-15.2.0 | 3.7 MB | ########## | 100% [A[A[A
libstdcxx-15.2.0 | 3.7 MB | ########## | 100% [A[A[A
libstdcxx-15.2.0 | 3.7 MB | ########## | 100% [A[A[A
[A
[A[A
[A[A[A
[A[A[A[A
[A[A[A[A[A
[A[A[A[A[A[A
[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A[A
[A[A[A[A[A[A[A[A[A[A[A[A[A done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.20.0
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/locality/1.20.0
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.3-py312ha2895bd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_A
added / updated specs:
- pandas=2.2.3
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2024.1
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.3-py312ha2895bd_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2024.1-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- python=3.12.8
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
bzip2 conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8
ca-certificates conda-forge/noarch::ca-certificates-2025.10.5-hbd8a1cb_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2
libexpat conda-forge/linux-aarch64::libexpat-2.7.1-hfae3067_0
libffi conda-forge/linux-aarch64::libffi-3.5.2-hd65408f_0
libgcc conda-forge/linux-aarch64::libgcc-15.2.0-he277a41_7
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-15.2.0-he9431aa_7
libgomp conda-forge/linux-aarch64::libgomp-15.2.0-he277a41_7
liblzma conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2
libnsl conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1
libsqlite conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0
libuuid conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0
libxcrypt conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1
libzlib conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2
ncurses conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3
openssl conda-forge/linux-aarch64::openssl-3.5.4-h8e36d6e_0
pip conda-forge/noarch::pip-25.2-pyh8b19718_0
python conda-forge/linux-aarch64::python-3.12.8-h1683364_1_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8382b9d_2
setuptools conda-forge/noarch::setuptools-80.9.0-pyhff2d567_0
tk conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102
tzdata conda-forge/noarch::tzdata-2025b-h78e105d_0
wheel conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.11.3
latest version: 25.9.1
Please update conda by running
$ conda update -n base -c conda-forge conda
## Package Plan ##
environment location: /home/biocbuild/bbs-3.21-bioc/meat/basilisk.Rcheck/tests/testthat/install-test-client/my_package_B
added / updated specs:
- pandas=2.2.2
- python-dateutil=2.8.2
- python=3.12.8
- pytz=2023.4
The following NEW packages will be INSTALLED:
libblas conda-forge/linux-aarch64::libblas-3.9.0-37_haddc8a3_openblas
libcblas conda-forge/linux-aarch64::libcblas-3.9.0-37_hd72aa62_openblas
libgfortran conda-forge/linux-aarch64::libgfortran-15.2.0-he9431aa_7
libgfortran5 conda-forge/linux-aarch64::libgfortran5-15.2.0-h87db57e_7
liblapack conda-forge/linux-aarch64::liblapack-3.9.0-37_h88aeb00_openblas
libopenblas conda-forge/linux-aarch64::libopenblas-0.3.30-pthreads_h9d3fd7e_2
libstdcxx conda-forge/linux-aarch64::libstdcxx-15.2.0-h3f4de04_7
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-15.2.0-hf1166c9_7
numpy conda-forge/linux-aarch64::numpy-2.3.3-py312h6615c27_0
pandas conda-forge/linux-aarch64::pandas-2.2.2-py312h14eacfc_1
python-dateutil conda-forge/noarch::python-dateutil-2.8.2-pyhd8ed1ab_0
python-tzdata conda-forge/noarch::python-tzdata-2025.2-pyhd8ed1ab_0
python_abi conda-forge/noarch::python_abi-3.12-8_cp312
pytz conda-forge/noarch::pytz-2023.4-pyhd8ed1ab_0
six conda-forge/noarch::six-1.17.0-pyhe01879c_1
Downloading and Extracting Packages: ...working... done
Preparing transaction: - \ | done
Verifying transaction: - \ | / - \ | / - \ done
Executing transaction: / - \ | / - \ | / - \ | / - \ | / - \ | / - \ | / - done
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On Linux aarch64 (1): 'test-install.R:35:5'
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 61 ]
>
> proc.time()
user system elapsed
410.829 301.464 1460.559
basilisk.Rcheck/basilisk-Ex.timings
| name | user | system | elapsed | |
| BasiliskEnvironment-class | 0.003 | 0.000 | 0.003 | |
| PyPiLink | 0 | 0 | 0 | |
| basiliskOptions | 0.001 | 0.000 | 0.001 | |
| basiliskStart | 78.402 | 6.449 | 145.891 | |
| configureBasiliskEnv | 0 | 0 | 0 | |
| createLocalBasiliskEnv | 29.786 | 2.754 | 45.326 | |
| listPackages | 0.514 | 0.094 | 1.650 | |
| obtainEnvironmentPath | 0.000 | 0.007 | 0.007 | |
| setupBasiliskEnv | 0.004 | 0.000 | 0.004 | |
| useBasiliskEnv | 1.277 | 0.114 | 1.575 | |