Multiple platform build/check report for BioC 3.21 - BUILD results for dreamlet on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.2 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4823
palomino7	Windows Server 2022 Datacenter	x64	4.5.1 (2025-06-13 ucrt) -- "Great Square Root"	4565
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4603
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4544
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4579
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for dreamlet on kunpeng2

To the developers/maintainers of the dreamlet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dreamlet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: dreamlet

Version: 1.6.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet

StartedAt: 2025-08-01 00:26:36 -0000 (Fri, 01 Aug 2025)

EndedAt: 2025-08-01 00:34:19 -0000 (Fri, 01 Aug 2025)

EllapsedTime: 462.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet
###
##############################################################################
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* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: variancePartition
Loading required namespace: dreamlet
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_covs.Rmd’ using rmarkdown

Quitting from cell_covs.Rmd:113-130 [processAssays]
Error: processing vignette 'cell_covs.Rmd' failed with diagnostics:
C stack usage  7970176 is too close to the limit
--- failed re-building ‘cell_covs.Rmd’

--- re-building ‘dreamlet.Rmd’ using rmarkdown

Quitting from dreamlet.Rmd:191-202 [test]
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
C stack usage  7970176 is too close to the limit
--- failed re-building ‘dreamlet.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’

--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’

--- re-building ‘non_lin_eff.Rmd’ using rmarkdown

Quitting from non_lin_eff.Rmd:94-116 [Age]
Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics:
C stack usage  7969184 is too close to the limit
--- failed re-building ‘non_lin_eff.Rmd’

SUMMARY: processing the following files failed:
  ‘cell_covs.Rmd’ ‘dreamlet.Rmd’ ‘non_lin_eff.Rmd’

Error: Vignette re-building failed.
Execution halted