Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2025-07-21 11:40 -0400 (Mon, 21 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.2 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4821
palomino7Windows Server 2022 Datacenterx644.5.1 (2025-06-13 ucrt) -- "Great Square Root" 4563
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4601
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4542
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2187/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tidyFlowCore 1.2.0  (landing page)
Timothy Keyes
Snapshot Date: 2025-07-17 13:40 -0400 (Thu, 17 Jul 2025)
git_url: https://git.bioconductor.org/packages/tidyFlowCore
git_branch: RELEASE_3_21
git_last_commit: bcddee6
git_last_commit_date: 2025-04-15 13:36:05 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for tidyFlowCore on nebbiolo1

To the developers/maintainers of the tidyFlowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidyFlowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: tidyFlowCore
Version: 1.2.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings tidyFlowCore_1.2.0.tar.gz
StartedAt: 2025-07-21 03:31:51 -0400 (Mon, 21 Jul 2025)
EndedAt: 2025-07-21 03:33:59 -0400 (Mon, 21 Jul 2025)
EllapsedTime: 128.1 seconds
RetCode: 0
Status:   OK  
CheckDir: tidyFlowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:tidyFlowCore.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings tidyFlowCore_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/tidyFlowCore.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘tidyFlowCore/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘tidyFlowCore’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tidyFlowCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

tidyFlowCore.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL tidyFlowCore
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘tidyFlowCore’ ...
** this is package ‘tidyFlowCore’ version ‘1.2.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tidyFlowCore)

Tests output

tidyFlowCore.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidyFlowCore)
> 
> test_check("tidyFlowCore")

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union


Attaching package: 'tidyr'

The following object is masked from 'package:testthat':

    matches

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 104 ]
> 
> proc.time()
   user  system elapsed 
 12.301   0.372  12.664 

Example timings

tidyFlowCore.Rcheck/tidyFlowCore-Ex.timings

nameusersystemelapsed
arrange.flowFrame0.2690.0030.272
arrange.flowSet0.360.000.36
as_flowFrame000
as_flowSet0.0000.0000.001
as_tof_tbl0.0320.0020.034
count.flowFrame0.2590.0020.262
count.flowSet0.1580.0010.161
filter.flowFrame0.1400.0010.141
filter.flowSet0.3750.0020.379
ggplot.flowFrame0.1120.0000.112
ggplot.flowSet0.1260.0000.127
group_by.flowFrame0.3400.0030.342
make_flowcore_annotated_data_frame000
mutate.flowFrame0.3040.0020.307
mutate.flowSet0.3720.0000.373
nest.flowFrame0.3460.0010.348
pull.flowFrame0.0930.0000.094
pull.flowSet0.0940.0040.099
reexports000
rename.flowFrame0.1390.0000.139
rename.flowSet0.360.030.39
rename_with.flowFrame0.1340.0010.135
rename_with.flowSet0.3450.0000.347
select.flowFrame0.1300.0020.131
select.flowSet0.3140.0010.316
simulate_cytometry_data0.0870.0010.088
slice.flowFrame0.140.000.14
slice.flowSet0.3420.0010.343
slice_head.flowFrame0.1380.0000.138
slice_head.flowSet0.3560.0000.356
slice_max.flowFrame0.1400.0040.144
slice_max.flowSet0.3620.0030.365
slice_min.flowFrame0.1570.0140.170
slice_min.flowSet0.3720.0100.383
slice_sample.flowFrame0.1400.0010.141
slice_sample.flowSet0.3650.0010.367
slice_tail.flowFrame0.1510.0000.151
slice_tail.flowSet0.3470.0010.349
summarise.flowFrame0.1050.0000.105
summarise.flowSet0.3150.0090.325
summarize.flowFrame0.0990.0000.099
summarize.flowSet0.1420.0180.161
tof_get_panel000
tof_set_panel0.0000.0000.001
transmute.flowFrame0.1340.0160.148
transmute.flowSet0.3090.0000.310
ungroup.flowSet0.1620.0020.164
unnest.flowSet0.2990.0020.302