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This page was generated on 2025-09-08 11:39 -0400 (Mon, 08 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4606
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4547
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4579
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2316/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
wiggleplotr 1.32.0  (landing page)
Kaur Alasoo
Snapshot Date: 2025-09-04 13:40 -0400 (Thu, 04 Sep 2025)
git_url: https://git.bioconductor.org/packages/wiggleplotr
git_branch: RELEASE_3_21
git_last_commit: a7b102a
git_last_commit_date: 2025-04-15 11:09:52 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    NA    NA  

BUILD results for wiggleplotr on nebbiolo1

To the developers/maintainers of the wiggleplotr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wiggleplotr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: wiggleplotr
Version: 1.32.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data wiggleplotr
StartedAt: 2025-09-07 20:23:58 -0400 (Sun, 07 Sep 2025)
EndedAt: 2025-09-07 20:24:30 -0400 (Sun, 07 Sep 2025)
EllapsedTime: 32.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data wiggleplotr
###
##############################################################################
##############################################################################


* checking for file ‘wiggleplotr/DESCRIPTION’ ... OK
* preparing ‘wiggleplotr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘wiggleplotr.Rmd’ using rmarkdown

Quitting from wiggleplotr.Rmd:169-173 [unnamed-chunk-16]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
---
Backtrace:
    ▆
 1. └─biomaRt::useMart("ENSEMBL_MART_ENSEMBL", host = "jan2020.archive.ensembl.org")
 2.   └─biomaRt:::.useMart(...)
 3.     └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'wiggleplotr.Rmd' failed with diagnostics:
Unexpected format to the list of available marts.
Please check the following URL manually, and try ?listMarts for advice.
http://jan2020.archive.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
--- failed re-building ‘wiggleplotr.Rmd’

SUMMARY: processing the following file failed:
  ‘wiggleplotr.Rmd’

Error: Vignette re-building failed.
Execution halted