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This page was generated on 2025-09-18 15:01 -0400 (Thu, 18 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 368/432HostnameOS / ArchINSTALLBUILDCHECK
Single.mTEC.Transcriptomes 1.36.0  (landing page)
Alejandro Reyes
Snapshot Date: 2025-09-18 07:30 -0400 (Thu, 18 Sep 2025)
git_url: https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
git_branch: RELEASE_3_21
git_last_commit: a8ea387
git_last_commit_date: 2025-04-15 10:04:26 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Single.mTEC.Transcriptomes on nebbiolo1

To the developers/maintainers of the Single.mTEC.Transcriptomes package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Single.mTEC.Transcriptomes
Version: 1.36.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
StartedAt: 2025-09-18 11:39:36 -0400 (Thu, 18 Sep 2025)
EndedAt: 2025-09-18 11:43:23 -0400 (Thu, 18 Sep 2025)
EllapsedTime: 226.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
###
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* checking for file ‘Single.mTEC.Transcriptomes/DESCRIPTION’ ... OK
* preparing ‘Single.mTEC.Transcriptomes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mTECs.Rnw’ using knitr

Quitting from mTECs.Rnw:2628-2645 [Figure_Supp7_karyograms]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
---
Backtrace:
     x
  1. +-ggplot2::autoplot(...)
  2. \-ggbio::autoplot(...)
  3.   \-ggbio (local) .local(object, ...)
  4.     \-ggbio::GGbio(p, data = object)
  5.       +-BiocGenerics::do.call(...)
  6.       +-base::do.call(...)
  7.       \-methods (local) `<fn>`(...)
  8.         +-methods::initialize(value, ...)
  9.         \-methods::initialize(value, ...)
 10.           \-methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mTECs.Rnw' failed with diagnostics:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building ‘mTECs.Rnw’

SUMMARY: processing the following file failed:
  ‘mTECs.Rnw’

Error: Vignette re-building failed.
Execution halted