| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-02-23 11:57 -0500 (Mon, 23 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4890 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 531/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| dearseq 1.22.0 (landing page) Boris P. Hejblum
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for dearseq in R Universe. | ||||||||||||||
|
To the developers/maintainers of the dearseq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/dearseq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: dearseq |
| Version: 1.22.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 dearseq |
| StartedAt: 2026-02-22 17:17:33 -0500 (Sun, 22 Feb 2026) |
| EndedAt: 2026-02-22 17:17:51 -0500 (Sun, 22 Feb 2026) |
| EllapsedTime: 18.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 dearseq
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* checking for file ‘dearseq/DESCRIPTION’ ... OK
* preparing ‘dearseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘dearseqUserguide.Rmd’ using rmarkdown
Quitting from dearseqUserguide.Rmd:86-105 [import]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Failure when receiving data from the peer [ftp.ncbi.nlm.nih.gov]:
GnuTLS recv error (-110): The TLS connection was non-properly terminated.
---
Backtrace:
▆
1. └─GEOquery::getGEO("GSE107991", GSEMatrix = FALSE)
2. └─GEOquery::getGEOfile(GEO, destdir = destdir, AnnotGPL = AnnotGPL)
3. └─GEOquery:::downloadFile(myurl, destfile, mode)
4. ├─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'dearseqUserguide.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Failure when receiving data from the peer [ftp.ncbi.nlm.nih.gov]:
GnuTLS recv error (-110): The TLS connection was non-properly terminated.
--- failed re-building ‘dearseqUserguide.Rmd’
SUMMARY: processing the following file failed:
‘dearseqUserguide.Rmd’
Error: Vignette re-building failed.
Execution halted