| Back to Rapid builds (Linux only) of a subset of BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 914 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 105/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| ggcyto 1.37.0 (landing page) Mike Jiang
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
|
To the developers/maintainers of the ggcyto package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ggcyto |
| Version: 1.37.0 |
| Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto |
| StartedAt: 2025-07-24 06:50:33 -0400 (Thu, 24 Jul 2025) |
| EndedAt: 2025-07-24 06:50:54 -0400 (Thu, 24 Jul 2025) |
| EllapsedTime: 21.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggcyto
###
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* checking for file ‘ggcyto/DESCRIPTION’ ... OK
* preparing ‘ggcyto’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘Top_features_of_ggcyto.Rmd’ using rmarkdown
Quitting from Top_features_of_ggcyto.Rmd:58-60 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
▆
1. ├─ggcyto::ggcyto(gs, aes(x = CD4, y = CD8))
2. └─ggcyto:::ggcyto.GatingSet(gs, aes(x = CD4, y = CD8))
3. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
4. ├─p + ggcyto_par_default()
5. └─p + ggcyto_par_default()
6. └─ggcyto:::add_ggcyto(e1, e2, e2name)
7. ├─e1 + e2.new
8. └─e1 + e2.new
9. └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Top_features_of_ggcyto.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘Top_features_of_ggcyto.Rmd’
--- re-building ‘autoplot.Rmd’ using rmarkdown
Quitting from autoplot.Rmd:27-29 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
▆
1. ├─ggplot2::autoplot(fs, x = "FSC-H")
2. └─ggcyto:::autoplot.flowSet(fs, x = "FSC-H")
3. ├─ggcyto::ggcyto(object, aes_q(x = as.symbol(x)), ...)
4. └─ggcyto:::ggcyto.flowSet(object, aes_q(x = as.symbol(x)), ...)
5. ├─p + ggcyto_par_default()
6. └─p + ggcyto_par_default()
7. └─ggcyto:::add_ggcyto(e1, e2, e2name)
8. ├─e1 + e2.new
9. └─e1 + e2.new
10. └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'autoplot.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘autoplot.Rmd’
--- re-building ‘ggcyto.GatingSet.Rmd’ using rmarkdown
--- finished re-building ‘ggcyto.GatingSet.Rmd’
--- re-building ‘ggcyto.flowSet.Rmd’ using rmarkdown
Quitting from ggcyto.flowSet.Rmd:29-33 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
▆
1. ├─ggcyto::ggcyto(fs, aes(x = `FSC-H`))
2. └─ggcyto:::ggcyto.flowSet(fs, aes(x = `FSC-H`))
3. ├─p + ggcyto_par_default()
4. └─p + ggcyto_par_default()
5. └─ggcyto:::add_ggcyto(e1, e2, e2name)
6. ├─e1 + e2.new
7. └─e1 + e2.new
8. └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ggcyto.flowSet.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘ggcyto.flowSet.Rmd’
SUMMARY: processing the following files failed:
‘Top_features_of_ggcyto.Rmd’ ‘autoplot.Rmd’ ‘ggcyto.flowSet.Rmd’
Error: Vignette re-building failed.
Execution halted