| Back to Build/check report for BioC 3.22 annotations |
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This page was generated on 2025-11-19 06:45 -0500 (Wed, 19 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4858 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 48/49 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| UCSCRepeatMasker 3.22.0 (landing page) Robert Castelo
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
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To the developers/maintainers of the UCSCRepeatMasker package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: UCSCRepeatMasker |
| Version: 3.22.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data UCSCRepeatMasker |
| StartedAt: 2025-11-19 05:57:50 -0500 (Wed, 19 Nov 2025) |
| EndedAt: 2025-11-19 05:58:17 -0500 (Wed, 19 Nov 2025) |
| EllapsedTime: 26.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data UCSCRepeatMasker
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* checking for file ‘UCSCRepeatMasker/DESCRIPTION’ ... OK
* preparing ‘UCSCRepeatMasker’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘UCSCRepeatMasker.Rmd’ using rmarkdown
Quitting from UCSCRepeatMasker.Rmd:74-77 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
name: AH99003
title: UCSC RepeatMasker annotations (Sep2021) for Human (hg38)
reason: 1 resources failed to download
---
Backtrace:
▆
1. ├─ah[["AH99003"]]
2. └─ah[["AH99003"]]
3. └─AnnotationHub (local) .local(x, i, j = j, ...)
4. └─AnnotationHub:::.Hub_get1(...)
5. └─base::tryCatch(...)
6. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
8. └─value[[3L]](cond)
9. └─base::tryCatch(...)
10. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
11. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
12. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'UCSCRepeatMasker.Rmd' failed with diagnostics:
failed to load resource
name: AH99003
title: UCSC RepeatMasker annotations (Sep2021) for Human (hg38)
reason: 1 resources failed to download
--- failed re-building ‘UCSCRepeatMasker.Rmd’
SUMMARY: processing the following file failed:
‘UCSCRepeatMasker.Rmd’
Error: Vignette re-building failed.
Execution halted