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This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4901
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 320/435HostnameOS / ArchINSTALLBUILDCHECK
qPLEXdata 1.27.0  (landing page)
Kamal Kishore Developer
Snapshot Date: 2025-10-28 07:30 -0400 (Tue, 28 Oct 2025)
git_url: https://git.bioconductor.org/packages/qPLEXdata
git_branch: devel
git_last_commit: 05e84b6
git_last_commit_date: 2025-04-15 10:11:51 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for qPLEXdata on nebbiolo2

To the developers/maintainers of the qPLEXdata package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: qPLEXdata
Version: 1.27.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXdata
StartedAt: 2025-10-28 11:36:05 -0400 (Tue, 28 Oct 2025)
EndedAt: 2025-10-28 11:36:58 -0400 (Tue, 28 Oct 2025)
EllapsedTime: 52.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXdata
###
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* checking for file ‘qPLEXdata/DESCRIPTION’ ... OK
* preparing ‘qPLEXdata’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘qPLEXdata.Rnw’ using knitr

Quitting from qPLEXdata.Rnw:54-74 [exp1_specificity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
---
Backtrace:
    x
 1. \-qPLEXanalyzer::getContrastResults(diffstats = diffstats, contrast = contrasts)
 2.   \-qPLEXanalyzer:::checkArg_getContrastResults(...)
 3.     \-assertthat::assert_that(is_validContrast(contrast, diffstats))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qPLEXdata.Rnw' failed with diagnostics:
'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
--- failed re-building ‘qPLEXdata.Rnw’

SUMMARY: processing the following file failed:
  ‘qPLEXdata.Rnw’

Error: Vignette re-building failed.
Execution halted