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This page was generated on 2026-03-10 11:32 -0400 (Tue, 10 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" 4522
kjohnson3macOS 13.7.7 Venturaarm64R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" 2847
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 757/2360HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 2.23.2  (landing page)
Mike Jiang
Snapshot Date: 2026-03-09 13:40 -0400 (Mon, 09 Mar 2026)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: devel
git_last_commit: daac2b1
git_last_commit_date: 2026-02-18 19:33:52 -0400 (Wed, 18 Feb 2026)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  ERROR    ERROR  skippedskipped
See other builds for flowCore in R Universe.

BUILD results for flowCore on nebbiolo1

To the developers/maintainers of the flowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.23.2
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
StartedAt: 2026-03-09 17:31:34 -0400 (Mon, 09 Mar 2026)
EndedAt: 2026-03-09 17:32:15 -0400 (Mon, 09 Mar 2026)
EllapsedTime: 41.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
###
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* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘flowCore’ ...
** this is package ‘flowCore’ version ‘2.23.2’
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c FastLogicle.cpp -o FastLogicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Hyperlog.cpp -o Hyperlog.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c Logicle.cpp -o Logicle.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c biexponential.cpp -o biexponential.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c convertRawBytes.cpp -o convertRawBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c cpp11.cpp -o cpp11.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fcsTextParse.cpp -o fcsTextParse.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c hyperlogTransform.cpp -o hyperlogTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c inPolygon.cpp -o inPolygon.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c inPolytope.cpp -o inPolytope.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c logicleTransform.cpp -o logicleTransform.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c poly_centroid.cpp -o poly_centroid.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c sortBytes.cpp -o sortBytes.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c uint2double.cpp -o uint2double.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG -DBOOST_NO_AUTO_PTR -w -Wfatal-errors -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cpp11/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RProtoBufLib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c zeroin.cpp -o zeroin.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o biexponential.o convertRawBytes.o cpp11.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o logicleTransform.o poly_centroid.o sortBytes.o uint2double.o zeroin.o /home/biocbuild/bbs-3.23-bioc/R/site-library/cytolib/lib/libcytolib.a /home/biocbuild/bbs-3.23-bioc/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/bbs-3.23-bioc/R/site-library/Rhdf5lib/lib/libhdf5.a -L/home/biocbuild/bbs-3.23-bioc/R/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
if [ `uname -s` = 'Darwin' ]; then install_name_tool -change /usr/local/clang4/lib/libc++.1.dylib /usr/lib/libc++.1.dylib flowCore.so; fi
installing to /tmp/Rtmp3ww7S5/Rinst35c5ee7353a91b/00LOCK-flowCore/00new/flowCore/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘flowCore’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/tmp/Rtmp3ww7S5/Rinst35c5ee7353a91b/00LOCK-flowCore/00new/flowCore/libs/flowCore.so':
  /tmp/Rtmp3ww7S5/Rinst35c5ee7353a91b/00LOCK-flowCore/00new/flowCore/libs/flowCore.so: undefined symbol: dgelsd_
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/Rtmp3ww7S5/Rinst35c5ee7353a91b/flowCore’
      -----------------------------------
ERROR: package installation failed