BioC experimental data: CHECK report for GSBenchMark on morelia

Package: GSBenchMark

Version: 0.105.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.105.0.tar.gz

StartedAt: 2015-11-25 10:38:51 -0800 (Wed, 25 Nov 2015)

EndedAt: 2015-11-25 10:39:27 -0800 (Wed, 25 Nov 2015)

EllapsedTime: 36.3 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GSBenchMark_0.105.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘0.105.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... [1s/2s] OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [7s/7s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.

* installing *source* package ‘GSBenchMark’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.376	0.020	0.400
bipolar_GDS2190	0.325	0.011	0.337
breast_GDS807	0.323	0.009	0.335
diracpathways	0.014	0.001	0.015
exprsdata	0.490	0.025	0.519
leukemia_GSEA	0.297	0.014	0.315
logexprsdata	0.463	0.013	0.485
marfan_GDS2960	0.156	0.009	0.221
melanoma_GDS2735	0.418	0.018	0.460
parkinsons_GDS2519	0.675	0.035	0.785
phenotypes	0.468	0.018	0.493
prostate_GDS2545_m_nf	0.258	0.013	0.275
prostate_GDS2545_m_p	0.482	0.017	0.501
prostate_GDS2545_p_nf	0.443	0.019	0.465
sarcoma_data	0.738	0.055	0.799
squamous_GDS2520	0.294	0.020	0.475