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BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on linux2.bioconductor.org

This page was generated on 2015-10-24 19:25:36 -0400 (Sat, 24 Oct 2015).

Package 138/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGandMetacoreDzPathwaysGEO 0.105.0
Gaurav Bhatti
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/KEGGandMetacoreDzPathwaysGEO
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 0.105.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.105.0.tar.gz
StartedAt: 2015-10-24 12:23:07 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:23:50 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 43.2 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.105.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.105.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... [1s/1s] OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.3280.0200.348
GSE119063.0650.0153.081
GSE14924_CD40.2730.0120.286
GSE14924_CD80.2250.0120.238
GSE167590.3030.0040.306
GSE194200.1900.0120.202
GSE201640.070.000.07
GSE227800.1950.0000.196
GSE238780.6970.0000.699
GSE24739_G00.5300.0040.534
GSE24739_G10.6200.0040.625
GSE301530.6820.0080.691
GSE326760.6780.0000.678
GSE38666_epithelia0.3030.0080.311
GSE38666_stroma0.1920.0080.201
GSE41830.2270.0080.234
GSE420570.9050.0040.910
GSE73050.6490.0080.658
KEGGandMetacoreDzPathwaysGEO-package0.6680.0120.681