BioC experimental data: CHECK report for ListerEtAlBSseq on zin2

Package: ListerEtAlBSseq

Version: 1.4.2

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ListerEtAlBSseq_1.4.2.tar.gz

StartedAt: 2016-10-08 09:44:18 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 09:46:38 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 140.4 seconds

RetCode: 0

Status:  OK

CheckDir: ListerEtAlBSseq.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings ListerEtAlBSseq_1.4.2.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ListerEtAlBSseq.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ListerEtAlBSseq/DESCRIPTION’ ... OK
* this is package ‘ListerEtAlBSseq’ version ‘1.4.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ListerEtAlBSseq’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 659.0Mb
  sub-directories of 1Mb or more:
    data       2.9Mb
    extdata  656.0Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/ListerEtAlBSseq.Rcheck/00check.log’
for details.

* installing *source* package ‘ListerEtAlBSseq’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ListerEtAlBSseq)

name	user	system	elapsed
H1.WGBS	0.577	0.008	0.613
IMR90.WGBS	0.156	0.012	0.168