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BioC experimental data: CHECK report for bsseqData on linux2.bioconductor.org

This page was generated on 2015-10-24 19:25:31 -0400 (Sat, 24 Oct 2015).

Package 29/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bsseqData 0.9.0
Kasper Daniel Hansen
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/bsseqData
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: bsseqData
Version: 0.9.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings bsseqData_0.9.0.tar.gz
StartedAt: 2015-10-24 11:52:06 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 11:53:52 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 105.5 seconds
RetCode: 0
Status:  OK 
CheckDir: bsseqData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings bsseqData_0.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/bsseqData.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘bsseqData/DESCRIPTION’ ... OK
* this is package ‘bsseqData’ version ‘0.9.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘bsseqData’ can be installed ... [43s/43s] OK
* checking installed package size ... NOTE
  installed size is 201.0Mb
  sub-directories of 1Mb or more:
    data   140.0Mb
    umtab   60.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [8s/8s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/bsseqData.Rcheck/00check.log’
for details.


bsseqData.Rcheck/00install.out:

* installing *source* package ‘bsseqData’ ...
** data
*** moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (bsseqData)

bsseqData.Rcheck/bsseqData-Ex.timings:

nameusersystemelapsed
BS.cancer.ex1.5180.0601.581
BS.cancer.ex.fit1.7600.1001.862
BS.cancer.ex.tstat0.3080.0280.336
keepLoci.ex0.0040.0000.004