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BioC experimental data: CHECK report for grndata on windows2.bioconductor.org

This page was generated on 2015-10-24 19:26:00 -0400 (Sat, 24 Oct 2015).

Package 105/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
grndata 1.3.0
Pau Bellot
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/grndata
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: grndata
Version: 1.3.0
Command: rm -rf grndata.buildbin-libdir grndata.Rcheck && mkdir grndata.buildbin-libdir grndata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=grndata.buildbin-libdir grndata_1.3.0.tar.gz >grndata.Rcheck\00install.out 2>&1 && cp grndata.Rcheck\00install.out grndata-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=grndata.buildbin-libdir --install="check:grndata-install.out" --force-multiarch --no-vignettes --timings grndata_1.3.0.tar.gz
StartedAt: 2015-10-24 12:19:17 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:20:04 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 46.9 seconds
RetCode: 0
Status:  OK  
CheckDir: grndata.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf grndata.buildbin-libdir grndata.Rcheck && mkdir grndata.buildbin-libdir grndata.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=grndata.buildbin-libdir grndata_1.3.0.tar.gz >grndata.Rcheck\00install.out 2>&1 && cp grndata.Rcheck\00install.out grndata-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=grndata.buildbin-libdir --install="check:grndata-install.out" --force-multiarch --no-vignettes --timings grndata_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/grndata.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'grndata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'grndata' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'grndata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 54.3Mb
  sub-directories of 1Mb or more:
    data  54.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [2s] OK
** running examples for arch 'x64' ... [2s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R' [2s]
 [2s] OK
** running tests for arch 'x64' ...
  Running 'runTests.R' [2s]
 [2s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/grndata.Rcheck/00check.log'
for details.


grndata.Rcheck/00install.out:


install for i386

* installing *source* package 'grndata' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'grndata' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'grndata' as grndata_1.3.0.zip
* DONE (grndata)

grndata.Rcheck/examples_i386/grndata-Ex.timings:

nameusersystemelapsed
Availabledata0.030.000.03
getData0.170.030.20
gnw1565.data0.180.040.23
gnw1565.net0.110.000.11
gnw2000.data0.290.080.36
gnw2000.net0.170.000.17
rogers1000.data0.080.020.09
rogers1000.net0.030.000.03
syntren1000.data0.060.000.07
syntren1000.net0.040.000.03
syntren300.data0.020.000.02
syntren300.net000
toy.data000
toy.net000

grndata.Rcheck/examples_x64/grndata-Ex.timings:

nameusersystemelapsed
Availabledata0.060.000.06
getData0.250.030.28
gnw1565.data0.220.030.25
gnw1565.net0.080.020.11
gnw2000.data0.300.010.32
gnw2000.net0.170.000.17
rogers1000.data0.040.000.04
rogers1000.net0.020.020.04
syntren1000.data0.080.020.09
syntren1000.net0.010.010.03
syntren300.data0.020.020.03
syntren300.net000
toy.data000
toy.net000