BioC experimental data: CHECK report for miRNATarget on zin2

Package: miRNATarget

Version: 1.10.0

Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.10.0.tar.gz

StartedAt: 2016-10-08 09:49:55 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 09:50:43 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 47.5 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.016	0.000	0.017
HS_refseq_to_affy_hc_g110	0.006	0.000	0.006
HS_refseq_to_affy_hg_focus	0.021	0.000	0.021
HS_refseq_to_affy_hg_u133_plus_2	0.067	0.004	0.071
HS_refseq_to_affy_hg_u133a	0.048	0.004	0.052
HS_refseq_to_affy_hg_u133a_2	0.04	0.00	0.04
HS_refseq_to_affy_hg_u133b	0.024	0.000	0.024
HS_refseq_to_affy_hg_u95a	0.025	0.000	0.025
HS_refseq_to_affy_hg_u95av2	0.032	0.000	0.032
HS_refseq_to_affy_hg_u95b	0.012	0.004	0.017
HS_refseq_to_affy_hg_u95c	0.013	0.000	0.013
HS_refseq_to_affy_hg_u95d	0.007	0.000	0.007
HS_refseq_to_affy_hg_u95e	0.013	0.000	0.013
HS_refseq_to_affy_huex_1_0_st_v2	1.300	0.032	1.334
HS_refseq_to_affy_hugene_1_0_st_v1	0.053	0.000	0.053
HS_refseq_to_affy_hugenefl	0.015	0.000	0.016
HS_refseq_to_affy_u133_x3p	0.079	0.000	0.079
HS_refseq_to_agilent_cgh_44b	0.010	0.004	0.013
HS_refseq_to_agilent_wholegenome	0.075	0.000	0.076
HS_refseq_to_canonical_transcript_stable_id	0.070	0.004	0.073
HS_refseq_to_ccds	0.036	0.004	0.040
HS_refseq_to_codelink	0.042	0.000	0.042
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.002	0.000	0.003
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.002	0.000	0.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.003	0.000	0.002
HS_refseq_to_embl	0.879	0.004	0.883
HS_refseq_to_ensembl_exon_id	0.002	0.000	0.003
HS_refseq_to_ensembl_gene_id	0.048	0.000	0.047
HS_refseq_to_ensembl_peptide_id	0.041	0.000	0.042
HS_refseq_to_ensembl_transcript_id	0.053	0.000	0.052
HS_refseq_to_entrezgene	0.049	0.000	0.049
HS_refseq_to_hgnc_id	0.045	0.000	0.045
HS_refseq_to_hgnc_symbol	0.042	0.004	0.046
HS_refseq_to_hgnc_transcript_name	0.053	0.000	0.053
HS_refseq_to_illumina_humanht_12	0.109	0.000	0.109
HS_refseq_to_illumina_humanwg_6_v1	0.046	0.000	0.046
HS_refseq_to_illumina_humanwg_6_v2	0.041	0.000	0.041
HS_refseq_to_illumina_humanwg_6_v3	0.05	0.00	0.05
HS_refseq_to_interpro	0.126	0.000	0.127
HS_refseq_to_ipi	0.105	0.012	0.117
HS_refseq_to_merops	0.005	0.000	0.005
HS_refseq_to_pdb	0.216	0.008	0.224
HS_refseq_to_pfam	0.071	0.000	0.071
HS_refseq_to_phalanx_onearray	0.042	0.000	0.042
HS_refseq_to_protein_id	0.657	0.016	0.673
HS_refseq_to_refseq_dna	0.061	0.000	0.061
HS_refseq_to_refseq_genomic	0.002	0.000	0.002
HS_refseq_to_refseq_peptide	0.176	0.000	0.176
HS_refseq_to_rfam	0.004	0.000	0.004
HS_refseq_to_rfam_gene_name	0.001	0.000	0.001
HS_refseq_to_rfam_transcript_name	0.000	0.004	0.002
HS_refseq_to_smart	0.034	0.004	0.039
HS_refseq_to_tigrfam	0.006	0.000	0.006
HS_refseq_to_ucsc	0.05	0.00	0.05
HS_refseq_to_unigene	0.066	0.000	0.067
HS_refseq_to_uniprot_genename	0.045	0.000	0.045
HS_refseq_to_uniprot_genename_transcript_name	0.003	0.000	0.002
HS_refseq_to_uniprot_sptrembl	0.002	0.000	0.002
HS_refseq_to_uniprot_swissprot	0.000	0.004	0.003
HS_refseq_to_uniprot_swissprot_accession	0.002	0.000	0.002
HS_refseq_to_wikigene_id	0.002	0.000	0.003
HS_refseq_to_wikigene_name	0.05	0.00	0.05
MM_conv_id	0.004	0.000	0.003
MM_refseq_to_affy_mg_u74a	0.017	0.000	0.017
MM_refseq_to_affy_mg_u74av2	0.016	0.000	0.016
MM_refseq_to_affy_mg_u74b	0.013	0.000	0.014
MM_refseq_to_affy_mg_u74bv2	0.014	0.000	0.014
MM_refseq_to_affy_mg_u74c	0.006	0.000	0.005
MM_refseq_to_affy_mg_u74cv2	0.007	0.000	0.007
MM_refseq_to_affy_moe430a	0.033	0.000	0.033
MM_refseq_to_affy_moe430b	0.016	0.000	0.016
MM_refseq_to_affy_moex_1_0_st_v1	0.532	0.004	0.536
MM_refseq_to_affy_mogene_1_0_st_v1	0.043	0.000	0.043
MM_refseq_to_affy_mouse430_2	0.043	0.004	0.048
MM_refseq_to_affy_mouse430a_2	0.033	0.000	0.033
MM_refseq_to_affy_mu11ksuba	0.060	0.004	0.063
MM_refseq_to_affy_mu11ksubb	0.008	0.000	0.008
MM_refseq_to_agilent_wholegenome	0.157	0.000	0.158
MM_refseq_to_canonical_transcript_stable_id	0.061	0.000	0.060
MM_refseq_to_ccds	0.029	0.004	0.034
MM_refseq_to_codelink	0.037	0.000	0.037
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.003	0.000	0.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.003	0.000	0.003
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.000	0.004	0.004
MM_refseq_to_embl	0.500	0.004	0.504
MM_refseq_to_ensembl_exon_id	0.003	0.000	0.003
MM_refseq_to_ensembl_gene_id	0.035	0.000	0.035
MM_refseq_to_ensembl_peptide_id	0.036	0.000	0.036
MM_refseq_to_ensembl_transcript_id	0.035	0.004	0.039
MM_refseq_to_entrezgene	0.034	0.000	0.034
MM_refseq_to_fantom	0.095	0.000	0.095
MM_refseq_to_illumina_mousewg_6_v1	0.046	0.000	0.046
MM_refseq_to_illumina_mousewg_6_v2	0.049	0.000	0.049
MM_refseq_to_interpro	0.102	0.004	0.106
MM_refseq_to_ipi	0.002	0.000	0.002
MM_refseq_to_merops	0.004	0.000	0.004
MM_refseq_to_mgi_id	0.041	0.000	0.040
MM_refseq_to_mgi_symbol	0.041	0.000	0.041
MM_refseq_to_mgi_transcript_name	0.043	0.000	0.043
MM_refseq_to_pdb	0.011	0.000	0.012
MM_refseq_to_pfam	0.068	0.000	0.067
MM_refseq_to_phalanx_onearray	0.036	0.004	0.039
MM_refseq_to_protein_id	0.395	0.000	0.396
MM_refseq_to_refseq_dna	0.049	0.000	0.048
MM_refseq_to_refseq_peptide	0.074	0.000	0.075
MM_refseq_to_rfam	0.003	0.000	0.003
MM_refseq_to_rfam_gene_name	0.002	0.000	0.002
MM_refseq_to_rfam_transcript_name	0.002	0.000	0.002
MM_refseq_to_smart	0.03	0.00	0.03
MM_refseq_to_tigrfam	0.005	0.000	0.005
MM_refseq_to_ucsc	0.038	0.000	0.038
MM_refseq_to_unigene	0.047	0.004	0.051
MM_refseq_to_uniprot_genename	0.035	0.000	0.035
MM_refseq_to_uniprot_genename_transcript_name	0.002	0.000	0.003
MM_refseq_to_uniprot_sptrembl	0.003	0.000	0.003
MM_refseq_to_uniprot_swissprot	0.003	0.000	0.002
MM_refseq_to_uniprot_swissprot_accession	0.002	0.000	0.002
MM_refseq_to_wikigene_id	0.002	0.000	0.002
MM_refseq_to_wikigene_name	0.035	0.000	0.035
TBL2	1.205	0.032	1.254
TBL2_HS	1.601	0.044	1.645
TBL2_MM	0.850	0.024	0.874
conv_id	0.003	0.000	0.003
id_conv	0.032	0.000	0.032