BioC experimental data: CHECK report for MUGAExampleData on malbec1

Package: MUGAExampleData

Version: 0.108.0

Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.108.0.tar.gz

StartedAt: 2017-04-15 11:07:11 -0400 (Sat, 15 Apr 2017)

EndedAt: 2017-04-15 11:07:42 -0400 (Sat, 15 Apr 2017)

EllapsedTime: 30.3 seconds

RetCode: 0

Status:  OK

CheckDir: MUGAExampleData.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.108.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/MUGAExampleData.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MUGAExampleData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MUGAExampleData’ version ‘0.108.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MUGAExampleData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 88.7Mb
  sub-directories of 1Mb or more:
    data  88.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/MUGAExampleData.Rcheck/00check.log’
for details.

* installing *source* package ‘MUGAExampleData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MUGAExampleData)

name	user	system	elapsed
FinalReport1	3.852	0.028	3.884
FinalReport2	1.360	0.008	1.366
MUGAExampleData-package	3.012	0.016	3.028
Samples1	0.000	0.000	0.001
Samples2	0.000	0.004	0.001
call.rate.batch	0.000	0.000	0.001
geno	0.952	0.004	0.955
model.probs	0.804	0.024	0.828
pheno	0.008	0.000	0.005
x	0.088	0.000	0.089
y	0.088	0.004	0.088