Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:31:25 -0400 (Thu, 12 Apr 2018).
Package 614/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GraphAT 1.50.0 Thomas LaFramboise
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | [ OK ] | OK | ![]() |
Package: GraphAT |
Version: 1.50.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GraphAT_1.50.0.tar.gz |
StartedAt: 2018-04-12 04:45:40 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 04:46:44 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 64.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GraphAT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings GraphAT_1.50.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/GraphAT.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GraphAT/DESCRIPTION’ ... OK * this is package ‘GraphAT’ version ‘1.50.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GraphAT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘graph’ ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: depthmat.Rd:28: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/GraphAT.Rcheck/00check.log’ for details.
GraphAT.Rcheck/00install.out
* installing *source* package ‘GraphAT’ ... ** R ** data ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (GraphAT)
GraphAT.Rcheck/GraphAT-Ex.timings
name | user | system | elapsed | |
Phenoclusters | 0.850 | 0.134 | 0.996 | |
causton | 0.469 | 0.032 | 0.512 | |
cellcycle | 0.194 | 0.046 | 0.240 | |
clust2Mat | 0.001 | 0.001 | 0.002 | |
depthmat | 0.258 | 0.073 | 0.345 | |
getpvalue | 0.009 | 0.001 | 0.010 | |
giaever | 0.474 | 0.039 | 0.515 | |
mRNAclusters | 0.415 | 0.105 | 0.530 | |
makeClustM | 0.000 | 0.000 | 0.001 | |
mat2UndirG | 0.063 | 0.001 | 0.064 | |
permPower | 0.779 | 0.052 | 0.846 | |
perms | 0.000 | 0.000 | 0.001 | |