Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:33:50 -0400 (Thu, 12 Apr 2018).
Package 908/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Mulcom 1.28.0 Claudio Isella
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: Mulcom |
Version: 1.28.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Mulcom_1.28.0.tar.gz |
StartedAt: 2018-04-12 06:50:59 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 06:52:19 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 79.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: Mulcom.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Mulcom_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/Mulcom.Rcheck’ * using R version 3.4.4 (2018-03-15) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Mulcom/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Mulcom’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Mulcom’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘fields’ which was already attached by Depends. Please remove these calls from your code. Package in Depends field not imported from: ‘fields’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE NB: .First.lib is obsolete and will not be used in R >= 3.0.0 File ‘Mulcom/R/mulib.R’: .First.lib calls: cat("Mulcom loaded\n") Package startup functions should use ‘packageStartupMessage’ to generate messages. See section ‘Good practice’ in '?.onAttach'. mulOptPlot: no visible global function definition for ‘image’ mulOptPlot: no visible global function definition for ‘image.plot’ mulParOpt: no visible global function definition for ‘image.plot’ Undefined global functions or variables: image image.plot Consider adding importFrom("graphics", "image") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed mulInt 11.008 0.699 11.999 mulOpt 5.499 0.835 6.485 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.6-bioc/meat/Mulcom.Rcheck/00check.log’ for details.
Mulcom.Rcheck/00install.out
* installing *source* package ‘Mulcom’ ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mulLibs.cc -o mulLibs.o mulLibs.cc:708:17: warning: expression result unused [-Wunused-value] current_cluster ; ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜ 1 warning generated. clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/Mulcom.Rcheck/Mulcom/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Mulcom)
Mulcom.Rcheck/Mulcom-Ex.timings
name | user | system | elapsed | |
MULCOM-class | 0.495 | 0.017 | 0.518 | |
MULCOM_P | 0.457 | 0.013 | 0.480 | |
mulCAND | 1.414 | 0.029 | 1.470 | |
mulCalc | 0.356 | 0.013 | 0.371 | |
mulDELTA | 0.199 | 0.009 | 0.210 | |
mulDiff | 1.421 | 0.046 | 1.507 | |
mulFSG | 1.165 | 0.033 | 1.216 | |
mulIndex | 0.278 | 0.017 | 0.302 | |
mulInt | 11.008 | 0.699 | 11.999 | |
mulOpt | 5.499 | 0.835 | 6.485 | |
mulOptPars | 1.198 | 0.025 | 1.242 | |
mulOptPlot | 1.899 | 0.149 | 2.056 | |
mulParOpt | 1.749 | 0.153 | 1.937 | |
mulPerm | 1.157 | 0.021 | 1.204 | |
mulPermC | 0.198 | 0.006 | 0.206 | |
mulScores | 0.283 | 0.008 | 0.297 | |