Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:23:54 -0400 (Thu, 12 Apr 2018).
Package 37/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
alsace 1.14.0 Ron Wehrens
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: alsace |
Version: 1.14.0 |
Command: rm -rf alsace.buildbin-libdir alsace.Rcheck && mkdir alsace.buildbin-libdir alsace.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=alsace.buildbin-libdir alsace_1.14.0.tar.gz >alsace.Rcheck\00install.out 2>&1 && cp alsace.Rcheck\00install.out alsace-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=alsace.buildbin-libdir --install="check:alsace-install.out" --force-multiarch --no-vignettes --timings alsace_1.14.0.tar.gz |
StartedAt: 2018-04-11 22:09:55 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:11:36 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 101.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: alsace.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf alsace.buildbin-libdir alsace.Rcheck && mkdir alsace.buildbin-libdir alsace.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=alsace.buildbin-libdir alsace_1.14.0.tar.gz >alsace.Rcheck\00install.out 2>&1 && cp alsace.Rcheck\00install.out alsace-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=alsace.buildbin-libdir --install="check:alsace-install.out" --force-multiarch --no-vignettes --timings alsace_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/alsace.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'alsace/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'alsace' version '1.14.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'alsace' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'lattice' in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE correctPeaks : <anonymous> : <anonymous>: no visible global function definition for 'predict' doALS: no visible global function definition for 'capture.output' findpeaks: no visible global function definition for 'embed' fitpeaks : fitpk: no visible global function definition for 'dnorm' getAllPeaks: no visible global function definition for 'median' getPeakTable: no visible global function definition for 'par' getPeakTable: no visible global function definition for 'colorRampPalette' getPeakTable : clusterPeaks: no visible global function definition for 'hclust' getPeakTable : clusterPeaks: no visible global function definition for 'dist' getPeakTable : clusterPeaks: no visible global function definition for 'cutree' getPeakTable : clusterPeaks: no visible global function definition for 'aggregate' getPeakTable : clusterPeaks: no visible global function definition for 'stripplot' getPeakTable : clusterPeaks : <anonymous>: no visible global function definition for 'panel.stripplot' getPeakTable : clusterPeaks : <anonymous>: no visible global function definition for 'panel.abline' matchCprofiles : <anonymous>: no visible global function definition for 'cor' matchCprofiles: no visible global function definition for 'median' matchCprofiles: no visible global function definition for 'cutree' matchCprofiles: no visible global function definition for 'hclust' matchCprofiles: no visible global function definition for 'as.dist' mergeTimeWindows : <anonymous>: no visible global function definition for 'cor' mergeTimeWindows: no visible global function definition for 'cor' mergeTimeWindows: no visible global function definition for 'cutree' mergeTimeWindows: no visible global function definition for 'hclust' mergeTimeWindows: no visible global function definition for 'as.dist' mergeTimeWindows: no visible global function definition for 'aggregate' plot.ALS: no visible global function definition for 'matplot' plot.ALS: no visible global function definition for 'abline' preprocess : <anonymous>: no visible global function definition for 'approx' preprocess : <anonymous>: no visible global function definition for 'smooth.spline' showALSresult: no visible global function definition for 'terrain.colors' showALSresult: no visible global function definition for 'par' showALSresult: no visible global function definition for 'layout' showALSresult: no visible global function definition for 'matplot' showALSresult: no visible global function definition for 'title' showALSresult: no visible global function definition for 'image' showALSresult: no visible global function definition for 'box' showALSresult: no visible global function definition for 'contour' showALSresult: no visible global function definition for 'plot' showALSresult: no visible global function definition for 'text' showALSresult: no visible global function definition for 'rect' showALSresult: no visible global function definition for 'axTicks' suggestCompCombis : cC.aux: no visible global function definition for 'cor' suggestCompCombis: no visible global function definition for 'as.dist' suggestCompCombis: no visible global function definition for 'hclust' suggestCompCombis: no visible global function definition for 'cutree' Undefined global functions or variables: abline aggregate approx as.dist axTicks box capture.output colorRampPalette contour cor cutree dist dnorm embed hclust image layout matplot median panel.abline panel.stripplot par plot predict rect smooth.spline stripplot terrain.colors text title Consider adding importFrom("grDevices", "colorRampPalette", "terrain.colors") importFrom("graphics", "abline", "axTicks", "box", "contour", "image", "layout", "matplot", "par", "plot", "rect", "text", "title") importFrom("stats", "aggregate", "approx", "as.dist", "cor", "cutree", "dist", "dnorm", "embed", "hclust", "median", "predict", "smooth.spline") importFrom("utils", "capture.output") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed components 9.65 0.00 9.69 correctPeaks 5.94 0.01 5.95 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed components 10.18 0.02 10.21 correctPeaks 6.19 0.01 6.32 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/alsace.Rcheck/00check.log' for details.
alsace.Rcheck/00install.out
install for i386 * installing *source* package 'alsace' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'alsace' finding HTML links ... done alsace-package html components html correctPeaks html correctRT html finding level-2 HTML links ... done doALS html filterPeaks html fitpeaks html getAllPeaks html getPeakTable html opa html preprocess html showALSresult html tea html teaMerged html windows html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'alsace' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'alsace' as alsace_1.14.0.zip * DONE (alsace) In R CMD INSTALL In R CMD INSTALL
alsace.Rcheck/examples_i386/alsace-Ex.timings
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alsace.Rcheck/examples_x64/alsace-Ex.timings
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