Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:19:53 -0400 (Thu, 12 Apr 2018).
Package 98/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
baySeq 2.12.0 Thomas J. Hardcastle
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: baySeq |
Version: 2.12.0 |
Command: rm -rf baySeq.buildbin-libdir baySeq.Rcheck && mkdir baySeq.buildbin-libdir baySeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=baySeq.buildbin-libdir baySeq_2.12.0.tar.gz >baySeq.Rcheck\00install.out 2>&1 && cp baySeq.Rcheck\00install.out baySeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=baySeq.buildbin-libdir --install="check:baySeq-install.out" --force-multiarch --no-vignettes --timings baySeq_2.12.0.tar.gz |
StartedAt: 2018-04-11 22:22:47 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:27:41 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 294.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: baySeq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf baySeq.buildbin-libdir baySeq.Rcheck && mkdir baySeq.buildbin-libdir baySeq.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=baySeq.buildbin-libdir baySeq_2.12.0.tar.gz >baySeq.Rcheck\00install.out 2>&1 && cp baySeq.Rcheck\00install.out baySeq-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=baySeq.buildbin-libdir --install="check:baySeq-install.out" --force-multiarch --no-vignettes --timings baySeq_2.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/baySeq.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'baySeq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'baySeq' version '2.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'baySeq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed baySeq-package 37.54 0.01 37.54 getPriors 24.07 0.02 24.10 getLikelihoods 13.61 0.00 13.61 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed baySeq-package 43.51 0.00 43.51 getPriors 32.84 0.01 32.86 getLikelihoods 13.61 0.02 13.62 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
baySeq.Rcheck/00install.out
install for i386 * installing *source* package 'baySeq' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'baySeq' finding HTML links ... done CDPost html CDPriors html allModels html baySeq-classes html baySeq-package html bimodalSep html densityFunction html densityFunctions html getLibsizes html getLikelihoods html getPosteriors html getPriors html getTPs html makeOrderings html marginaliseEqual html marginalisePairwise html methObservables html mobAnnotation html mobData html pairData html plotMA.CD html plotNullPrior html plotPosteriors html plotPriors html selectTop html simData html summarisePosteriors html topCounts html zimData html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'baySeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'baySeq' as baySeq_2.12.0.zip * DONE (baySeq) In R CMD INSTALL In R CMD INSTALL
baySeq.Rcheck/examples_i386/baySeq-Ex.timings
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baySeq.Rcheck/examples_x64/baySeq-Ex.timings
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