Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-02-22 14:51:15 -0500 (Thu, 22 Feb 2018).
Package 289/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
conumee 1.12.0 Volker Hovestadt
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK |
Package: conumee |
Version: 1.12.0 |
Command: C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings conumee_1.12.0.tar.gz |
StartedAt: 2018-02-21 23:24:22 -0500 (Wed, 21 Feb 2018) |
EndedAt: 2018-02-22 00:00:58 -0500 (Thu, 22 Feb 2018) |
EllapsedTime: 2195.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: conumee.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --no-vignettes --timings conumee_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/conumee.Rcheck' * using R version 3.4.3 (2017-11-30) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'conumee/DESCRIPTION' ... OK * this is package 'conumee' version '1.12.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'conumee' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE CNV.load,GenomicRatioSet: no visible global function definition for 'assays' CNV.load,matrix: no visible binding for global variable 'anno' Undefined global functions or variables: anno assays * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed CNV.detailplot 107.33 1.41 108.73 CNV.detailplot_wrap 106.43 1.37 107.81 CNV.genomeplot 93.05 1.77 94.81 CNV.write 90.83 1.70 92.55 CNV.segment 86.16 1.08 87.23 CNV.analysis-class 79.50 1.37 80.89 CNV.fit 56.33 0.84 57.18 CNV.detail 45.13 0.39 45.52 CNV.create_anno 43.98 0.09 44.08 CNV.bin 41.97 0.53 42.50 CNV.anno-class 34.67 0.24 34.90 read.450k.url 8.00 0.85 18.51 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/conumee.Rcheck/00check.log' for details.
conumee.Rcheck/00install.out
* installing *source* package 'conumee' ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (conumee) In R CMD INSTALL
conumee.Rcheck/conumee-Ex.timings
name | user | system | elapsed | |
CNV.analysis-class | 79.50 | 1.37 | 80.89 | |
CNV.anno-class | 34.67 | 0.24 | 34.90 | |
CNV.bin | 41.97 | 0.53 | 42.50 | |
CNV.create_anno | 43.98 | 0.09 | 44.08 | |
CNV.data-class | 3.11 | 0.16 | 3.26 | |
CNV.detail | 45.13 | 0.39 | 45.52 | |
CNV.detailplot | 107.33 | 1.41 | 108.73 | |
CNV.detailplot_wrap | 106.43 | 1.37 | 107.81 | |
CNV.fit | 56.33 | 0.84 | 57.18 | |
CNV.genomeplot | 93.05 | 1.77 | 94.81 | |
CNV.load | 2.04 | 0.25 | 2.30 | |
CNV.segment | 86.16 | 1.08 | 87.23 | |
CNV.write | 90.83 | 1.70 | 92.55 | |
read.450k.url | 8.00 | 0.85 | 18.51 | |