Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:45:47 -0400 (Thu, 12 Apr 2018).
Package 93/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BASiCS 1.0.1 Catalina A. Vallejos
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | ![]() |
Package: BASiCS |
Version: 1.0.1 |
Command: rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BASiCS_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BASiCS.buildbin-libdir |
StartedAt: 2018-04-12 11:08:25 -0400 (Thu, 12 Apr 2018) |
EndedAt: 2018-04-12 11:09:15 -0400 (Thu, 12 Apr 2018) |
EllapsedTime: 49.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: BASiCS_1.0.1.tgz |
PackageFileSize: 2.906 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf BASiCS.buildbin-libdir && mkdir BASiCS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BASiCS_1.0.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BASiCS.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BASiCS.buildbin-libdir BASiCS_1.0.1.tar.gz' >>>>>>> * installing *source* package ‘BASiCS’ ... ** libs clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c BASiCS_CPPcode.cpp -o BASiCS_CPPcode.o In file included from BASiCS_CPPcode.cpp:12: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include/RcppArmadillo.h:31: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include/RcppArmadilloForward.h:26: In file included from /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/RcppCommon.h:138: /Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include/Rcpp/exceptions.h:106:53: warning: all paths through this function will call itself [-Winfinite-recursion] inline void warning(const std::string& message) { // #nocov start ^ 1 warning generated. clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/RcppArmadillo/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BASiCS.so BASiCS_CPPcode.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.6-bioc/meat/BASiCS.buildbin-libdir/BASiCS/libs ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (BASiCS) >>>>>>> >>>>>>> FIXING LINKS FOR BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BASiCS.buildbin-libdir/BASiCS/libs//BASiCS.so"