Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:23:25 -0400 (Thu, 12 Apr 2018).
Package 200/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CexoR 1.16.0 Pedro Madrigal
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: CexoR |
Version: 1.16.0 |
Command: rm -rf CexoR.buildbin-libdir CexoR.Rcheck && mkdir CexoR.buildbin-libdir CexoR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CexoR.buildbin-libdir CexoR_1.16.0.tar.gz >CexoR.Rcheck\00install.out 2>&1 && cp CexoR.Rcheck\00install.out CexoR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CexoR.buildbin-libdir --install="check:CexoR-install.out" --force-multiarch --no-vignettes --timings CexoR_1.16.0.tar.gz |
StartedAt: 2018-04-11 22:47:42 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 22:54:46 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 424.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CexoR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CexoR.buildbin-libdir CexoR.Rcheck && mkdir CexoR.buildbin-libdir CexoR.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CexoR.buildbin-libdir CexoR_1.16.0.tar.gz >CexoR.Rcheck\00install.out 2>&1 && cp CexoR.Rcheck\00install.out CexoR-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=CexoR.buildbin-libdir --install="check:CexoR-install.out" --force-multiarch --no-vignettes --timings CexoR_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/CexoR.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CexoR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CexoR' version '1.16.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CexoR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License components with restrictions not permitted: GPL-2 + file LICENSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE cexor: no visible global function definition for 'subsetByOverlaps' cexor : Stouffer.test: no visible global function definition for 'qnorm' cexor : Stouffer.test: no visible global function definition for 'pnorm' cexor : Fisher.test: no visible global function definition for 'pchisq' plotcexor: no visible global function definition for 'colorRampPalette' plotcexor: no visible global function definition for 'par' plotcexor: no visible global function definition for 'plot' plotcexor: no visible global function definition for 'points' plotcexor: no visible global function definition for 'abline' plotcexor: no visible global function definition for 'legend' pskellam: no visible global function definition for 'pchisq' pskellam.sp: no visible global function definition for 'pnorm' pskellam.sp: no visible global function definition for 'dnorm' Undefined global functions or variables: abline colorRampPalette dnorm legend par pchisq plot pnorm points qnorm subsetByOverlaps Consider adding importFrom("grDevices", "colorRampPalette") importFrom("graphics", "abline", "legend", "par", "plot", "points") importFrom("stats", "dnorm", "pchisq", "pnorm", "qnorm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed CexoR-package 14.16 0.06 14.30 cexor 12.07 0.05 12.12 plotcexor 10.39 0.07 10.47 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed cexor 16.65 0.10 16.75 plotcexor 16.47 0.15 16.63 CexoR-package 15.55 0.14 16.59 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/CexoR.Rcheck/00check.log' for details.
CexoR.Rcheck/00install.out
install for i386 * installing *source* package 'CexoR' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'CexoR' finding HTML links ... done CexoR-internal html CexoR-package html cexor html plotcexor html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'CexoR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CexoR' as CexoR_1.16.0.zip * DONE (CexoR) In R CMD INSTALL In R CMD INSTALL
CexoR.Rcheck/tests_i386/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("CexoR") || stop("unable to load CexoR") Loading required package: CexoR Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges [1] TRUE > BiocGenerics:::testPackage("CexoR") RUNIT TEST PROTOCOL -- Wed Apr 11 22:54:18 2018 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : CexoR RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 19.78 0.29 20.06 |
CexoR.Rcheck/tests_x64/runTests.Rout R version 3.4.4 (2018-03-15) -- "Someone to Lean On" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > require("CexoR") || stop("unable to load CexoR") Loading required package: CexoR Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The following objects are masked from 'package:parallel': clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, cbind, colMeans, colSums, colnames, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:base': expand.grid Loading required package: IRanges [1] TRUE > BiocGenerics:::testPackage("CexoR") RUNIT TEST PROTOCOL -- Wed Apr 11 22:54:42 2018 *********************************************** Number of test functions: 1 Number of errors: 0 Number of failures: 0 1 Test Suite : CexoR RUnit Tests - 1 test function, 0 errors, 0 failures Number of test functions: 1 Number of errors: 0 Number of failures: 0 > > proc.time() user system elapsed 23.10 0.40 23.51 |
CexoR.Rcheck/examples_i386/CexoR-Ex.timings
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CexoR.Rcheck/examples_x64/CexoR-Ex.timings
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