Back to Multiple platform build/check report for BioC 3.6 |
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This page was generated on 2018-04-12 13:24:58 -0400 (Thu, 12 Apr 2018).
Package 423/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
EnrichmentBrowser 2.8.7 Ludwig Geistlinger
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | ![]() | ||||||
veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | ![]() |
Package: EnrichmentBrowser |
Version: 2.8.7 |
Command: rm -rf EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && mkdir EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.8.7.tar.gz >EnrichmentBrowser.Rcheck\00install.out 2>&1 && cp EnrichmentBrowser.Rcheck\00install.out EnrichmentBrowser-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=EnrichmentBrowser.buildbin-libdir --install="check:EnrichmentBrowser-install.out" --force-multiarch --no-vignettes --timings EnrichmentBrowser_2.8.7.tar.gz |
StartedAt: 2018-04-11 23:47:21 -0400 (Wed, 11 Apr 2018) |
EndedAt: 2018-04-11 23:57:52 -0400 (Wed, 11 Apr 2018) |
EllapsedTime: 631.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EnrichmentBrowser.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && mkdir EnrichmentBrowser.buildbin-libdir EnrichmentBrowser.Rcheck && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=EnrichmentBrowser.buildbin-libdir EnrichmentBrowser_2.8.7.tar.gz >EnrichmentBrowser.Rcheck\00install.out 2>&1 && cp EnrichmentBrowser.Rcheck\00install.out EnrichmentBrowser-install.out && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD check --library=EnrichmentBrowser.buildbin-libdir --install="check:EnrichmentBrowser-install.out" --force-multiarch --no-vignettes --timings EnrichmentBrowser_2.8.7.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.6-bioc/meat/EnrichmentBrowser.Rcheck' * using R version 3.4.4 (2018-03-15) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'EnrichmentBrowser/DESCRIPTION' ... OK * this is package 'EnrichmentBrowser' version '2.8.7' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EnrichmentBrowser' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'pathview:::parseKGML2Graph2' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed ebrowser 37.02 1.87 42.22 get.go.genesets 13.62 0.21 13.82 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed ebrowser 37.27 1.38 38.64 get.go.genesets 18.06 0.14 18.22 compile.grn.from.kegg 5.20 0.02 5.22 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.6-bioc/meat/EnrichmentBrowser.Rcheck/00check.log' for details.
EnrichmentBrowser.Rcheck/00install.out
install for i386 * installing *source* package 'EnrichmentBrowser' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'EnrichmentBrowser' finding HTML links ... done comb.ea.results html compile.grn.from.kegg html finding level-2 HTML links ... done config.ebrowser html de.ana html download.kegg.pathways html ea.browse html ebrowser html get.go.genesets html get.kegg.genesets html ggea.graph html isAvailable html make.example.data html map.ids html nbea html normalize html parseGMT html plots html probe.2.gene.eset html read.eset html sbea html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'EnrichmentBrowser' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'EnrichmentBrowser' as EnrichmentBrowser_2.8.7.zip * DONE (EnrichmentBrowser) In R CMD INSTALL In R CMD INSTALL
EnrichmentBrowser.Rcheck/examples_i386/EnrichmentBrowser-Ex.timings
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EnrichmentBrowser.Rcheck/examples_x64/EnrichmentBrowser-Ex.timings
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